PlantSME Plant secondary metabolism enzyme database

Oryza longistaminata (oryza_longistaminata)

Imported from atlas release summary for Oryza longistaminata.

1740
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Site group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Current group 117
Eudicots
Site group 495
Species Metadata
Taxon group
Monocots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
Terpenoid pathway 26.49% Alkaloid pathway 22.18% Phenylpropanoid pathway 22.01% Flavonoid pathway 12.7% Rosmarinic acid pathway 10.34% Steroid pathway 6.26%
Family Distribution
C4H 6.91% C3'H/CYP98A 6.62% BAHD 4.73% POD 4.41% T3O 4.14% UGT 3.89% IFS 3.56% CYP76 3.53%
Other Families 62.21%
More Families (97)
7DLGT 143 3.22% 4CL 126 2.84% UFGT 124 2.79% BR6OX2/CYP85A2 113 2.54% F3'H/CYP75B 110 2.48% DWF4/CYP90B1 108 2.43% CYP71 93 2.09% F3H 80 1.8% NMT 77 1.73% STR 70 1.58% CAD 69 1.55% TPS 68 1.53% SMT1/SMT2/SMT3 63 1.42% CAS 57 1.28% PYKS 56 1.26% GES 54 1.22% LAC 45 1.01% CSE 44 0.99% H6H 43 0.97% SGD 43 0.97% TRI/TRII 41 0.92% T16H 41 0.92% CCR 41 0.92% CODM/T6ODM 40 0.9% FNS 40 0.9% F3'5'H/CYP75A 39 0.88% CYP51G1 37 0.83% CHS 36 0.81% G8O/G8H 35 0.79% IFR 35 0.79% COMT 34 0.77% NCS 33 0.74% PAL 33 0.74% BR6OX1/CYP85A1 33 0.74% SLS 32 0.72% ANR 32 0.72% GS 31 0.7% DFR 31 0.7% HCT 31 0.7% IO 30 0.68% CYP90D1 29 0.65% PMT 28 0.63% 16OMT 28 0.63% F5H/CYP84A 28 0.63% RAS 26 0.59% LAMT 24 0.54% 7DLH 22 0.5% BBE 19 0.43% COR 18 0.41% 8HGO 16 0.36% CPD/CYP90A1 15 0.34% FPPS 12 0.27% ANS/LDOX 11 0.25% CPR 11 0.25% ROT3/CYP90C1 11 0.25% CYP80B1 10 0.23% MPO 9 0.2% CNMT 9 0.2% TAT 9 0.2% SQS/FDFT1 9 0.2% TYDC_DDC 8 0.18% CCoAOMT 7 0.16% MVD 7 0.16% AACT 7 0.16% CYP80F1 6 0.14% CYP719 6 0.14% CHI 6 0.14% SMO1/SMO2 6 0.14% HPPR 5 0.11% DXS 5 0.11% MVK 5 0.11% GGPPS 5 0.11% XMT_MXMT_DXMT 4 0.09% TDC 4 0.09% MDS/IspF 4 0.09% HMGS 4 0.09% ISY 3 0.07% DWF1 3 0.07% FK 3 0.07% MCT/IspD 3 0.07% HMGR 3 0.07% HDR/IspH 3 0.07% ODC 2 0.05% ADC 2 0.05% 6OMT_4OMT_SOMT 2 0.05% DET2 2 0.05% SQE 2 0.05% HDS/IspG 2 0.05% IDI 2 0.05% FLS 1 0.02% DWF7 1 0.02% CPI1 1 0.02% DWF5 1 0.02% HYD1 1 0.02% DXR 1 0.02% PMK 1 0.02% CMK/IspE 1 0.02%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 461 19 BAHD (151) View species results
Alkaloid pathway 386 24 7DLGT (74) View species results
Phenylpropanoid pathway 383 13 POD (164) View species results
Flavonoid pathway 221 13 UFGT (108) View species results
Rosmarinic acid pathway 180 7 C4H (110) View species results
Steroid pathway 109 14 SMT1/SMT2/SMT3 (45) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1898 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 267 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
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Gene Pathway Family Confidence Status
AMDW01021199.1_FGP001 Alkaloid BBE low borderline
AMDW01038031.1_FGP001 Alkaloid BBE medium borderline
KN538681.1_FGP101 Alkaloid BBE medium borderline
KN538681.1_FGP106 Alkaloid BBE medium borderline
KN538681.1_FGP109 Alkaloid BBE medium borderline
KN538707.1_FGP002 Alkaloid BBE medium borderline
KN538947.1_FGP010 Alkaloid BBE medium borderline
KN539287.1_FGP005 Alkaloid BBE medium borderline
KN540080.1_FGP003 Alkaloid BBE low borderline
KN540131.1_FGP004 Alkaloid BBE medium borderline
KN541334.1_FGP002 Alkaloid BBE medium borderline
KN541334.1_FGP003 Alkaloid BBE medium borderline
KN541334.1_FGP004 Alkaloid BBE medium borderline
KN541973.1_FGP001 Alkaloid BBE medium borderline
KN542847.1_FGP001 Alkaloid BBE medium borderline
KN543186.1_FGP001 Alkaloid BBE medium borderline
KN543758.1_FGP001 Alkaloid BBE low borderline
KN548619.1_FGP001 Alkaloid BBE medium borderline
KN548827.1_FGP001 Alkaloid BBE medium borderline