Oryza rhizomatis (oryza_rhizomatis)
Imported from atlas release summary for Oryza rhizomatis.
1935
Candidate Protein Records
1626
Pathway-Level Records
4131
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
- Download candidate protein FASTA for this species
Pathway Coverage
6
Pathways
Family Distribution
4131
Family-Level Calls
C4H
6.56%
C3'H/CYP98A
6.22%
BAHD
5.86%
UGT
4.89%
7DLGT
4.38%
POD
4.24%
UFGT
4.21%
T3O
3.85%
Other Families
59.79%
More Families (97)
CYP76
147
3.56%
IFS
144
3.49%
4CL
141
3.41%
F3'H/CYP75B
104
2.52%
BR6OX2/CYP85A2
101
2.44%
NMT
90
2.18%
DWF4/CYP90B1
86
2.08%
CYP71
75
1.82%
F3H
73
1.77%
STR
71
1.72%
SMT1/SMT2/SMT3
52
1.26%
PYKS
51
1.23%
TPS
49
1.19%
CAD
48
1.16%
GES
44
1.07%
G8O/G8H
44
1.07%
CAS
43
1.04%
LAC
41
0.99%
RAS
41
0.99%
SGD
38
0.92%
CSE
38
0.92%
H6H
37
0.9%
CODM/T6ODM
37
0.9%
HCT
37
0.9%
T16H
35
0.85%
FNS
34
0.82%
PMT
32
0.77%
IFR
32
0.77%
SLS
31
0.75%
CCR
31
0.75%
TRI/TRII
29
0.7%
ANR
28
0.68%
CYP90D1
28
0.68%
CHS
27
0.65%
IO
26
0.63%
COMT
26
0.63%
F5H/CYP84A
25
0.61%
CYP51G1
25
0.61%
GS
23
0.56%
BR6OX1/CYP85A1
23
0.56%
NCS
21
0.51%
16OMT
21
0.51%
PAL
21
0.51%
CPD/CYP90A1
21
0.51%
F3'5'H/CYP75A
20
0.48%
DFR
15
0.36%
COR
14
0.34%
BBE
13
0.31%
CPR
13
0.31%
8HGO
12
0.29%
CNMT
11
0.27%
TAT
11
0.27%
CYP80B1
10
0.24%
LAMT
9
0.22%
7DLH
9
0.22%
MPO
8
0.19%
ANS/LDOX
8
0.19%
SQS/FDFT1
8
0.19%
SQE
8
0.19%
FPPS
8
0.19%
HPPR
7
0.17%
GGPPS
7
0.17%
ROT3/CYP90C1
6
0.15%
MVK
6
0.15%
AACT
6
0.15%
TYDC_DDC
5
0.12%
CCoAOMT
5
0.12%
6OMT_4OMT_SOMT
4
0.1%
CYP719
4
0.1%
CHI
4
0.1%
SMO1/SMO2
4
0.1%
HMGS
4
0.1%
MVD
4
0.1%
HMGR
4
0.1%
ISY
3
0.07%
TDC
3
0.07%
CYP80F1
3
0.07%
FLS
3
0.07%
DET2
3
0.07%
HYD1
3
0.07%
DWF1
3
0.07%
DXS
3
0.07%
MCT/IspD
3
0.07%
MDS/IspF
3
0.07%
ODC
2
0.05%
ADC
2
0.05%
XMT_MXMT_DXMT
2
0.05%
FK
2
0.05%
DWF5
2
0.05%
HDR/IspH
2
0.05%
PMK
2
0.05%
IDI
2
0.05%
CMK/IspE
2
0.05%
CPI1
1
0.02%
DWF7
1
0.02%
DXR
1
0.02%
HDS/IspG
1
0.02%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Pathway-Level Records | Detected Families | Top family | Results |
|---|---|---|---|---|
| Terpenoid pathway | 493 | 19 | UGT (176) | View species results |
| Alkaloid pathway | 324 | 23 | 7DLGT (67) | View species results |
| Phenylpropanoid pathway | 314 | 12 | POD (149) | View species results |
| Flavonoid pathway | 262 | 13 | UFGT (158) | View species results |
| Rosmarinic acid pathway | 147 | 7 | C4H (75) | View species results |
| Steroid pathway | 86 | 12 | CAS (32) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Detected families | Assignment calls | Included families |
|---|---|---|---|
| P450/oxygenase | 24 | 1654 | 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 3 | 320 | BAHD, HCT, RAS |
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Alkaloid pathway
| Protein/Isoform Record | Pathway | Family | Confidence | Status |
|---|---|---|---|---|
| Orhiscaffold87440304900.1 | Alkaloid | 7DLGT | medium | pass |
| Orhiscaffold87440304910.1 | Alkaloid | 7DLGT | low | borderline |
| Orhiscaffold8860306340.1 | Alkaloid | 7DLGT | low | borderline |
| Orhiscaffold88790306660.1 | Alkaloid | 7DLGT | low | borderline |
| Orhiscaffold90450309560.1 | Alkaloid | 7DLGT | medium | pass |
| Orhiscaffold97680318550.1 | Alkaloid | 7DLGT | low | borderline |
| Orhiscaffold16020053630.1 | Alkaloid | 7DLH | medium | borderline |
| Orhiscaffold16020053650.1 | Alkaloid | 7DLH | medium | borderline |
| Orhiscaffold31280146860.1 | Alkaloid | 7DLH | medium | borderline |
| Orhiscaffold43500198470.1 | Alkaloid | 7DLH | low | borderline |
| Orhiscaffold47510212240.1 | Alkaloid | 7DLH | low | borderline |
| Orhiscaffold54180232780.1 | Alkaloid | 7DLH | low | borderline |
| Orhiscaffold62510255120.1 | Alkaloid | 7DLH | low | borderline |
| Orhiscaffold6640264470.1 | Alkaloid | 7DLH | low | borderline |
| Orhiscaffold79480292190.1 | Alkaloid | 7DLH | medium | borderline |
| Orhiscaffold12160022020.1 | Alkaloid | 8HGO | low | borderline |
| Orhiscaffold1400038340.1 | Alkaloid | 8HGO | medium | borderline |
| Orhiscaffold1430040810.1 | Alkaloid | 8HGO | medium | borderline |
| Orhiscaffold1430040820.1 | Alkaloid | 8HGO | medium | pass |
| Orhiscaffold16120054580.1 | Alkaloid | 8HGO | medium | borderline |
| Orhiscaffold1620055180.1 | Alkaloid | 8HGO | medium | borderline |
| Orhiscaffold22850100110.1 | Alkaloid | 8HGO | low | borderline |
| Orhiscaffold47280211080.1 | Alkaloid | 8HGO | medium | pass |
| Orhiscaffold49040216920.1 | Alkaloid | 8HGO | low | borderline |
| Orhiscaffold5820243570.1 | Alkaloid | 8HGO | low | borderline |
| Orhiscaffold8530301790.1 | Alkaloid | 8HGO | medium | pass |
| Orhiscaffold8530301800.1 | Alkaloid | 8HGO | medium | borderline |
| Orhiscaffold14020038680.1 | Alkaloid | ADC | medium | pass |
| Orhiscaffold6810269290.1 | Alkaloid | ADC | medium | pass |
| Orhiscaffold100000700.1 | Alkaloid | BBE | medium | borderline |
| Orhiscaffold1270026330.1 | Alkaloid | BBE | medium | borderline |
| Orhiscaffold13470033740.1 | Alkaloid | BBE | low | borderline |
| Orhiscaffold13860036900.1 | Alkaloid | BBE | medium | borderline |
| Orhiscaffold18150069090.1 | Alkaloid | BBE | low | borderline |
| Orhiscaffold18340070080.1 | Alkaloid | BBE | low | borderline |
| Orhiscaffold26910123760.1 | Alkaloid | BBE | medium | borderline |
| Orhiscaffold26910123770.1 | Alkaloid | BBE | low | borderline |
| Orhiscaffold27600127920.1 | Alkaloid | BBE | low | borderline |
| Orhiscaffold43300197690.1 | Alkaloid | BBE | medium | borderline |
| Orhiscaffold43820199690.1 | Alkaloid | BBE | low | borderline |
| Orhiscaffold43820199700.1 | Alkaloid | BBE | medium | borderline |
| Orhiscaffold80770294840.1 | Alkaloid | BBE | low | borderline |
| Orhiscaffold15530050020.1 | Alkaloid | CNMT | medium | pass |
| Orhiscaffold17120061830.1 | Alkaloid | CNMT | low | borderline |
| Orhiscaffold24080107970.1 | Alkaloid | CNMT | low | borderline |
| Orhiscaffold25080113910.1 | Alkaloid | CNMT | low | borderline |
| Orhiscaffold45430205330.1 | Alkaloid | CNMT | low | borderline |
| Orhiscaffold5200227110.1 | Alkaloid | CNMT | medium | borderline |
| Orhiscaffold5200227120.1 | Alkaloid | CNMT | medium | borderline |
| Orhiscaffold6810269350.1 | Alkaloid | CNMT | low | borderline |