PlantSME Plant secondary metabolism enzyme database

Oryza rhizomatis (oryza_rhizomatis)

Imported from atlas release summary for Oryza rhizomatis.

1626
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 493 19 UGT (176) View species results
Alkaloid pathway 324 23 7DLGT (67) View species results
Phenylpropanoid pathway 314 12 POD (149) View species results
Flavonoid pathway 262 13 UFGT (158) View species results
Rosmarinic acid pathway 147 7 C4H (75) View species results
Steroid pathway 86 12 CAS (32) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1654 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 320 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Flavonoid pathway
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Gene Pathway Family Confidence Status
Orhiscaffold38100177480.1 Flavonoid F3H low borderline
Orhiscaffold39100181350.1 Flavonoid F3H medium pass
Orhiscaffold42390194140.1 Flavonoid F3H medium borderline
Orhiscaffold42420194240.1 Flavonoid F3H medium borderline
Orhiscaffold4270195010.1 Flavonoid F3H medium borderline
Orhiscaffold43470198180.1 Flavonoid F3H low borderline
Orhiscaffold43470198180.2 Flavonoid F3H medium borderline
Orhiscaffold43470198190.1 Flavonoid F3H medium borderline
Orhiscaffold44220201190.1 Flavonoid F3H medium pass
Orhiscaffold45920206870.1 Flavonoid F3H medium borderline
Orhiscaffold46680209330.1 Flavonoid F3H medium pass
Orhiscaffold49740218950.1 Flavonoid F3H medium borderline
Orhiscaffold49740218960.1 Flavonoid F3H medium borderline
Orhiscaffold5060222490.1 Flavonoid F3H medium borderline
Orhiscaffold5130224770.1 Flavonoid F3H medium borderline
Orhiscaffold5130224790.1 Flavonoid F3H medium borderline
Orhiscaffold5170226070.1 Flavonoid F3H low borderline
Orhiscaffold51790226280.1 Flavonoid F3H low borderline
Orhiscaffold5200227150.1 Flavonoid F3H medium borderline
Orhiscaffold5370231500.1 Flavonoid F3H medium pass
Orhiscaffold5380231770.1 Flavonoid F3H medium borderline
Orhiscaffold5450233610.1 Flavonoid F3H medium borderline
Orhiscaffold5710240690.1 Flavonoid F3H medium pass
Orhiscaffold63480257430.1 Flavonoid F3H medium borderline
Orhiscaffold650261450.1 Flavonoid F3H medium pass
Orhiscaffold650261460.1 Flavonoid F3H medium borderline
Orhiscaffold650261460.2 Flavonoid F3H medium borderline
Orhiscaffold67560267620.1 Flavonoid F3H medium borderline
Orhiscaffold67560267630.1 Flavonoid F3H medium borderline
Orhiscaffold7070275600.1 Flavonoid F3H medium pass
Orhiscaffold730279600.1 Flavonoid F3H medium pass
Orhiscaffold73650281020.1 Flavonoid F3H medium borderline
Orhiscaffold7520283910.1 Flavonoid F3H medium borderline
Orhiscaffold76330286080.1 Flavonoid F3H medium borderline
Orhiscaffold77140287950.1 Flavonoid F3H low borderline
Orhiscaffold8550302100.1 Flavonoid F3H medium borderline
Orhiscaffold9190311230.1 Flavonoid F3H medium borderline
Orhiscaffold15330048450.1 Flavonoid FLS low borderline
Orhiscaffold15460049460.1 Flavonoid FLS low borderline
Orhiscaffold16650057940.1 Flavonoid FLS medium borderline
Orhiscaffold11250014280.1 Flavonoid FNS medium borderline
Orhiscaffold11360015000.1 Flavonoid FNS medium borderline
Orhiscaffold12290023200.1 Flavonoid FNS medium borderline
Orhiscaffold12560025530.1 Flavonoid FNS medium borderline
Orhiscaffold13770035940.1 Flavonoid FNS medium borderline
Orhiscaffold150045850.1 Flavonoid FNS medium borderline
Orhiscaffold17980067230.1 Flavonoid FNS medium borderline
Orhiscaffold18100068750.1 Flavonoid FNS low borderline
Orhiscaffold19210075990.1 Flavonoid FNS medium borderline
Orhiscaffold21930094640.1 Flavonoid FNS medium borderline