PlantSME Plant secondary metabolism enzyme database

Panicum virgatum (panicum_virgatum)

Imported from atlas release summary for Panicum virgatum.

6488
Candidate Protein Records
5617
Pathway-Level Records
12778
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Family Distribution
More Families (98)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 1471 20 BAHD (546) View species results
Alkaloid pathway 1354 25 7DLGT (243) View species results
Phenylpropanoid pathway 1185 11 POD (599) View species results
Flavonoid pathway 712 13 UFGT (422) View species results
Rosmarinic acid pathway 466 7 C4H (205) View species results
Steroid pathway 429 12 CAS (177) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 24 4263 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 994 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Alkaloid pathway
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Protein/Isoform Record Pathway Family Confidence Status
Pvir08NG0005600.1 Alkaloid H6H low borderline
Pvir09KG0000530.1 Alkaloid H6H medium pass
Pvir09KG0031760.1 Alkaloid H6H low borderline
Pvir09KG0031760.2 Alkaloid H6H low borderline
Pvir09KG0035980.1 Alkaloid H6H medium borderline
Pvir09KG0035980.2 Alkaloid H6H medium borderline
Pvir09KG0037740.1 Alkaloid H6H medium borderline
Pvir09KG0038410.1 Alkaloid H6H low borderline
Pvir09KG0038410.2 Alkaloid H6H low borderline
Pvir09KG0038830.1 Alkaloid H6H low borderline
Pvir09KG0043340.1 Alkaloid H6H medium borderline
Pvir09KG0048040.2 Alkaloid H6H medium borderline
Pvir09KG0061560.2 Alkaloid H6H low borderline
Pvir09KG0062910.1 Alkaloid H6H medium borderline
Pvir09KG0062910.4 Alkaloid H6H medium borderline
Pvir09NG0000490.1 Alkaloid H6H medium pass
Pvir09NG0000490.2 Alkaloid H6H medium pass
Pvir09NG0000490.3 Alkaloid H6H medium pass
Pvir09NG0017370.1 Alkaloid H6H medium borderline
Pvir09NG0017380.1 Alkaloid H6H medium borderline
Pvir09NG0030990.1 Alkaloid H6H low borderline
Pvir09NG0030990.2 Alkaloid H6H low borderline
Pvir09NG0030990.3 Alkaloid H6H low borderline
Pvir09NG0030990.4 Alkaloid H6H low borderline
Pvir09NG0030990.5 Alkaloid H6H low borderline
Pvir09NG0032340.1 Alkaloid H6H medium borderline
Pvir09NG0036880.1 Alkaloid H6H medium borderline
Pvir09NG0036880.2 Alkaloid H6H medium borderline
Pvir09NG0037710.1 Alkaloid H6H low borderline
Pvir09NG0038920.1 Alkaloid H6H low borderline
Pvir09NG0042740.2 Alkaloid H6H medium borderline
Pvir09NG0042760.1 Alkaloid H6H medium borderline
Pvir01KG0000850.1 Alkaloid IO medium borderline
Pvir01KG0000850.2 Alkaloid IO medium borderline
Pvir01KG0011360.1 Alkaloid IO medium borderline
Pvir01KG0011360.2 Alkaloid IO medium borderline
Pvir02KG0004920.1 Alkaloid IO medium borderline
Pvir02NG0032210.1 Alkaloid IO medium borderline
Pvir02NG0032210.2 Alkaloid IO medium borderline
Pvir03KG0036290.1 Alkaloid IO medium borderline
Pvir03KG0048320.1 Alkaloid IO medium borderline
Pvir03NG0033690.1 Alkaloid IO medium borderline
Pvir03NG0044060.1 Alkaloid IO medium borderline
Pvir04KG0016370.1 Alkaloid IO medium pass
Pvir04NG0002000.3 Alkaloid IO medium borderline
Pvir04NG0002000.4 Alkaloid IO medium borderline
Pvir04NG0014840.1 Alkaloid IO medium pass
Pvir04NG0014870.1 Alkaloid IO medium pass
Pvir04NG0019930.1 Alkaloid IO low borderline
Pvir04NG0023450.1 Alkaloid IO medium borderline