PlantSME Plant secondary metabolism enzyme database

Panicum virgatum (panicum_virgatum)

Imported from atlas release summary for Panicum virgatum.

6488
Candidate Protein Records
5617
Pathway-Level Records
12778
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Family Distribution
More Families (98)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 1471 20 BAHD (546) View species results
Alkaloid pathway 1354 25 7DLGT (243) View species results
Phenylpropanoid pathway 1185 11 POD (599) View species results
Flavonoid pathway 712 13 UFGT (422) View species results
Rosmarinic acid pathway 466 7 C4H (205) View species results
Steroid pathway 429 12 CAS (177) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 24 4263 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 994 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Terpenoid pathway
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Protein/Isoform Record Pathway Family Confidence Status
Pvir07NG0032500.1 Terpenoid FPPS medium pass
Pvir07NG0032500.2 Terpenoid FPPS medium pass
Pvir07NG0032510.1 Terpenoid FPPS medium pass
Pvir08NG0018090.1 Terpenoid FPPS low borderline
Pvir01KG0032480.1 Terpenoid GGPPS medium borderline
Pvir01KG0032510.1 Terpenoid GGPPS medium borderline
Pvir01NG0031720.1 Terpenoid GGPPS medium borderline
Pvir02KG0045050.1 Terpenoid GGPPS medium borderline
Pvir02NG0041650.1 Terpenoid GGPPS medium borderline
Pvir03KG0017460.1 Terpenoid GGPPS medium borderline
Pvir03KG0017460.2 Terpenoid GGPPS medium borderline
Pvir03KG0037980.1 Terpenoid GGPPS medium borderline
Pvir03NG0010510.1 Terpenoid GGPPS medium borderline
Pvir03NG0016030.1 Terpenoid GGPPS medium borderline
Pvir03NG0034940.1 Terpenoid GGPPS medium borderline
Pvir04KG0031590.1 Terpenoid GGPPS medium borderline
Pvir04NG0027890.1 Terpenoid GGPPS medium borderline
Pvir05KG0011770.1 Terpenoid GGPPS medium borderline
Pvir05KG0011780.1 Terpenoid GGPPS medium borderline
Pvir05NG0011790.1 Terpenoid GGPPS medium borderline
Pvir06KG0008490.1 Terpenoid GGPPS medium borderline
Pvir06KG0008490.10 Terpenoid GGPPS medium borderline
Pvir06KG0008490.2 Terpenoid GGPPS medium borderline
Pvir06KG0008490.3 Terpenoid GGPPS medium borderline
Pvir06KG0008490.4 Terpenoid GGPPS medium borderline
Pvir06KG0008490.5 Terpenoid GGPPS medium borderline
Pvir06KG0008490.6 Terpenoid GGPPS medium borderline
Pvir06KG0008490.7 Terpenoid GGPPS medium borderline
Pvir06KG0008490.8 Terpenoid GGPPS medium borderline
Pvir06KG0008490.9 Terpenoid GGPPS medium borderline
Pvir06NG0008280.1 Terpenoid GGPPS medium borderline
Pvir02KG0001270.1 Terpenoid GPPS low borderline
Pvir05KG0049790.3 Terpenoid GPPS low borderline
Pvir05NG0049000.1 Terpenoid GPPS low borderline
Pvir09KG0010090.1 Terpenoid HDR/IspH high pass
Pvir09NG0010440.1 Terpenoid HDR/IspH high pass
Pvir01KG0027240.1 Terpenoid HDS/IspG high pass
Pvir01NG0026840.1 Terpenoid HDS/IspG high pass
Pvir01NG0026840.2 Terpenoid HDS/IspG high pass
Pvir01NG0026840.3 Terpenoid HDS/IspG high pass
Pvir01NG0026840.4 Terpenoid HDS/IspG high pass
Pvir01NG0026840.5 Terpenoid HDS/IspG high pass
Pvir01NG0026840.6 Terpenoid HDS/IspG high pass
Pvir01KG0036150.1 Terpenoid HMGR medium pass
Pvir01NG0034980.1 Terpenoid HMGR medium pass
Pvir02KG0032080.1 Terpenoid HMGR medium pass
Pvir02NG0029320.1 Terpenoid HMGR medium pass
Pvir02NG0029320.2 Terpenoid HMGR medium pass
Pvir03KG0007270.1 Terpenoid HMGR low borderline
Pvir05KG0033030.1 Terpenoid HMGR low borderline