PlantSME Plant secondary metabolism enzyme database

Plagiochila semidecurrens (plagiochila_semidecurrens)

Imported from atlas release summary for Plagiochila semidecurrens.

683
Candidate Genes
101
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Bryophytes
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (93)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Phenylpropanoid pathway 188 12 POD (84) View species results
Terpenoid pathway 169 17 BAHD (62) View species results
Alkaloid pathway 132 18 NMT (21) View species results
Flavonoid pathway 85 10 UFGT (42) View species results
Rosmarinic acid pathway 72 7 C4H (35) View species results
Steroid pathway 37 13 CAS (9) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 633 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 144 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: C4H
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Gene Pathway Family Confidence Status
Psem4380080178410 Rosmarinic Acid C4H low borderline
Psem4386250182270 Rosmarinic Acid C4H medium pass
Psem4387250183160 Rosmarinic Acid C4H low borderline
Psem4393680187680 Rosmarinic Acid C4H low borderline
Psem4394820188760 Rosmarinic Acid C4H low borderline
Psem4399480192810 Rosmarinic Acid C4H low borderline
Psem4400410193540 Rosmarinic Acid C4H medium pass
Psem4407100199240 Rosmarinic Acid C4H low borderline
Psem4409340201460 Rosmarinic Acid C4H low borderline
Psem4411000203030 Rosmarinic Acid C4H medium pass
Psem4412460204520 Rosmarinic Acid C4H low borderline
Psem4415320207970 Rosmarinic Acid C4H low borderline
Psem4418780210970 Rosmarinic Acid C4H medium pass
Psem4420130212510 Rosmarinic Acid C4H low borderline
Psem4421230213600 Rosmarinic Acid C4H low borderline
Psem4423120215430 Rosmarinic Acid C4H low borderline
Psem4425590218000 Rosmarinic Acid C4H medium pass
Psem4426810219270 Rosmarinic Acid C4H low borderline
Psem4427800220610 Rosmarinic Acid C4H medium pass
Psem4430780223700 Rosmarinic Acid C4H low borderline
Psem4432900226210 Rosmarinic Acid C4H medium pass
Psem4435550229610 Rosmarinic Acid C4H low borderline
Psem4437390231710 Rosmarinic Acid C4H low borderline
Psem4437850232180 Rosmarinic Acid C4H low borderline
Psem4439860234650 Rosmarinic Acid C4H medium pass
Psem4440390235510 Rosmarinic Acid C4H medium pass
Psem4441310236760 Rosmarinic Acid C4H medium pass
Psem4442170237990 Rosmarinic Acid C4H low borderline
Psem4447290245040 Rosmarinic Acid C4H low borderline
Psem4449720248860 Rosmarinic Acid C4H low borderline
Psem4449720248870 Rosmarinic Acid C4H low borderline
Psem4454950256210 Rosmarinic Acid C4H low borderline
Psem4456620258430 Rosmarinic Acid C4H low borderline
Psem4458410260660 Rosmarinic Acid C4H medium pass
Psem4459490262330 Rosmarinic Acid C4H medium pass
Psem4459840262740 Rosmarinic Acid C4H low borderline
Psem4460300263620 Rosmarinic Acid C4H low borderline
Psem4466130271700 Rosmarinic Acid C4H low borderline
Psem4552210278510 Rosmarinic Acid C4H medium pass
Psem4552220278540 Rosmarinic Acid C4H medium pass
Psem4552780278550 Rosmarinic Acid C4H low borderline
Psem4552810278570 Rosmarinic Acid C4H low borderline
Psem4598150280490 Rosmarinic Acid C4H low borderline
Psem4598160280500 Rosmarinic Acid C4H low borderline
Psem4656680282310 Rosmarinic Acid C4H low borderline
Psem4712990293530 Rosmarinic Acid C4H low borderline
Psem4713000293560 Rosmarinic Acid C4H low borderline
Psem4723260296290 Rosmarinic Acid C4H low borderline
Psem4723270296310 Rosmarinic Acid C4H low borderline
Psem4730296350 Rosmarinic Acid C4H medium pass