Plagiochila semidecurrens (plagiochila_semidecurrens)
Imported from atlas release summary for Plagiochila semidecurrens.
683
Candidate Genes
101
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Bryophytes
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
6
Pathways
Family Distribution
683
Candidate Genes
C4H
6.37%
BAHD
5.86%
C3'H/CYP98A
5.19%
POD
5.03%
CYP76
4.97%
4CL
4.86%
NMT
3.41%
IFS
3.02%
Other Families
61.31%
More Families (93)
UGT
53
2.96%
STR
52
2.9%
7DLGT
48
2.68%
UFGT
47
2.62%
DWF4/CYP90B1
40
2.23%
BR6OX2/CYP85A2
39
2.18%
IFR
37
2.07%
T3O
36
2.01%
F3H
34
1.9%
F3'H/CYP75B
31
1.73%
TRI/TRII
30
1.68%
GS
30
1.68%
PAL
27
1.51%
H6H
25
1.4%
G8O/G8H
23
1.28%
HCT
22
1.23%
COMT
22
1.23%
CAD
21
1.17%
SMT1/SMT2/SMT3
21
1.17%
LAMT
19
1.06%
IO
19
1.06%
RAS
17
0.95%
ANR
15
0.84%
CSE
15
0.84%
8HGO
14
0.78%
CNMT
14
0.78%
T16H
14
0.78%
LAC
14
0.78%
SGD
13
0.73%
FNS
13
0.73%
COR
11
0.61%
F3'5'H/CYP75A
11
0.61%
PYKS
10
0.56%
CYP80B1
10
0.56%
CCR
10
0.56%
CPD/CYP90A1
10
0.56%
PMT
9
0.5%
CAS
9
0.5%
BR6OX1/CYP85A1
9
0.5%
AACT
9
0.5%
CYP719
8
0.45%
16OMT
8
0.45%
NCS
7
0.39%
CODM/T6ODM
7
0.39%
CCoAOMT
7
0.39%
F5H/CYP84A
7
0.39%
TPS
7
0.39%
SLS
6
0.34%
TAT
6
0.34%
CYP71
6
0.34%
MVK
6
0.34%
BBE
5
0.28%
CHS
5
0.28%
CPR
5
0.28%
DWF5
5
0.28%
ISY
4
0.22%
CYP80F1
4
0.22%
MPO
4
0.22%
DFR
4
0.22%
HPPR
4
0.22%
CYP90D1
4
0.22%
PMK
4
0.22%
DXS
4
0.22%
CMK/IspE
4
0.22%
MCT/IspD
4
0.22%
TDC
3
0.17%
XMT_MXMT_DXMT
3
0.17%
ADC
3
0.17%
7DLH
3
0.17%
CHI
3
0.17%
ANS/LDOX
3
0.17%
DWF7
3
0.17%
SMO1/SMO2
3
0.17%
DET2
3
0.17%
SQS/FDFT1
3
0.17%
HMGR
3
0.17%
HDS/IspG
3
0.17%
GGPPS
3
0.17%
SQE
2
0.11%
ROT3/CYP90C1
2
0.11%
FK
2
0.11%
DWF1
2
0.11%
MVD
2
0.11%
MDS/IspF
2
0.11%
GES
1
0.06%
6OMT_4OMT_SOMT
1
0.06%
CPI1
1
0.06%
HYD1
1
0.06%
CYP51G1
1
0.06%
FPPS
1
0.06%
IDI
1
0.06%
DXR
1
0.06%
HMGS
1
0.06%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Candidate Genes | Families | Top family | Results |
|---|---|---|---|---|
| Phenylpropanoid pathway | 188 | 12 | POD (84) | View species results |
| Terpenoid pathway | 169 | 17 | BAHD (62) | View species results |
| Alkaloid pathway | 132 | 18 | NMT (21) | View species results |
| Flavonoid pathway | 85 | 10 | UFGT (42) | View species results |
| Rosmarinic acid pathway | 72 | 7 | C4H (35) | View species results |
| Steroid pathway | 37 | 13 | CAS (9) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Families | Candidate genes | Included families |
|---|---|---|---|
| P450/oxygenase | 24 | 633 | 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 3 | 144 | BAHD, HCT, RAS |
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: POD
| Gene | Pathway | Family | Confidence | Status | Best Target |
|---|---|---|---|---|---|
| Psem4433780227470 | Phenylpropanoid | POD | medium | pass | POD__00021__sp_Q9LEH3_PER15_IPOBA |
| Psem4434210228040 | Phenylpropanoid | POD | medium | pass | POD__00021__sp_Q9LEH3_PER15_IPOBA |
| Psem4435570229670 | Phenylpropanoid | POD | medium | pass | POD__00028__sp_Q9ZVD5_AGO4_ARATH |
| Psem4439980234970 | Phenylpropanoid | POD | medium | pass | POD__00021__sp_Q9LEH3_PER15_IPOBA |
| Psem4440530235700 | Phenylpropanoid | POD | medium | pass | POD__00021__sp_Q9LEH3_PER15_IPOBA |
| Psem4442570238670 | Phenylpropanoid | POD | medium | pass | POD__00024__sp_Q9SCX8_PPA17_ARATH |
| Psem4442920239110 | Phenylpropanoid | POD | medium | pass | POD__00012__sp_Q10N21_APX1_ORYSJ |
| Psem4443450239600 | Phenylpropanoid | POD | medium | pass | POD__00002__sp_A5H8G4_PER1_MAIZE |
| Psem4446900244640 | Phenylpropanoid | POD | medium | pass | POD__00020__sp_Q9FE01_APX2_ORYSJ |
| Psem4452810253200 | Phenylpropanoid | POD | medium | pass | POD__00021__sp_Q9LEH3_PER15_IPOBA |
| Psem4452980253450 | Phenylpropanoid | POD | medium | pass | POD__00028__sp_Q9ZVD5_AGO4_ARATH |
| Psem4453580254500 | Phenylpropanoid | POD | medium | pass | POD__00003__sp_A9PCL4_PRX2_POPTR |
| Psem4453990254900 | Phenylpropanoid | POD | medium | pass | POD__00002__sp_A5H8G4_PER1_MAIZE |
| Psem4454440255580 | Phenylpropanoid | POD | medium | pass | POD__00010__sp_P84516_PER1_SORBI |
| Psem4458470260730 | Phenylpropanoid | POD | medium | pass | POD__00021__sp_Q9LEH3_PER15_IPOBA |
| Psem4459950263010 | Phenylpropanoid | POD | medium | pass | POD__00013__sp_Q4W1I8_PER1_ZINEL |
| Psem4461650265500 | Phenylpropanoid | POD | low | borderline | POD__00028__sp_Q9ZVD5_AGO4_ARATH |
| Psem4467330273000 | Phenylpropanoid | POD | low | borderline | POD__00024__sp_Q9SCX8_PPA17_ARATH |
| Psem4518550277440 | Phenylpropanoid | POD | medium | pass | POD__00027__sp_Q9XIV8_PERN1_TOBAC |
| Psem4518560277450 | Phenylpropanoid | POD | medium | pass | POD__00027__sp_Q9XIV8_PERN1_TOBAC |
| Psem4637300281970 | Phenylpropanoid | POD | medium | pass | POD__00001__sp_A5H452_PER70_MAIZE |
| Psem4637300281990 | Phenylpropanoid | POD | medium | pass | POD__00001__sp_A5H452_PER70_MAIZE |
| Psem4637310282010 | Phenylpropanoid | POD | medium | pass | POD__00001__sp_A5H452_PER70_MAIZE |
| Psem4637320282030 | Phenylpropanoid | POD | medium | pass | POD__00001__sp_A5H452_PER70_MAIZE |
| Psem4670780282960 | Phenylpropanoid | POD | medium | pass | POD__00027__sp_Q9XIV8_PERN1_TOBAC |
| Psem4670790282980 | Phenylpropanoid | POD | medium | pass | POD__00027__sp_Q9XIV8_PERN1_TOBAC |
| Psem4692310288010 | Phenylpropanoid | POD | medium | pass | POD__00021__sp_Q9LEH3_PER15_IPOBA |
| Psem4692330288040 | Phenylpropanoid | POD | medium | pass | POD__00021__sp_Q9LEH3_PER15_IPOBA |
| Psem4695900288670 | Phenylpropanoid | POD | medium | pass | POD__00012__sp_Q10N21_APX1_ORYSJ |
| Psem4695910288690 | Phenylpropanoid | POD | medium | pass | POD__00012__sp_Q10N21_APX1_ORYSJ |
| Psem4711350292950 | Phenylpropanoid | POD | medium | pass | POD__00019__sp_Q949Y3_PPA26_ARATH |
| Psem4711360292960 | Phenylpropanoid | POD | medium | pass | POD__00019__sp_Q949Y3_PPA26_ARATH |
| Psem4715230294150 | Phenylpropanoid | POD | medium | pass | POD__00028__sp_Q9ZVD5_AGO4_ARATH |
| Psem4715240294170 | Phenylpropanoid | POD | medium | pass | POD__00028__sp_Q9ZVD5_AGO4_ARATH |
| Psem5810300310 | Phenylpropanoid | POD | medium | pass | POD__00001__sp_A5H452_PER70_MAIZE |
| Psem6560303130 | Phenylpropanoid | POD | medium | pass | POD__00019__sp_Q949Y3_PPA26_ARATH |
| Psem7010304340 | Phenylpropanoid | POD | low | borderline | POD__00028__sp_Q9ZVD5_AGO4_ARATH |
| Psem8170309160 | Phenylpropanoid | POD | medium | pass | POD__00021__sp_Q9LEH3_PER15_IPOBA |
| Psem9980318020 | Phenylpropanoid | POD | medium | pass | POD__00021__sp_Q9LEH3_PER15_IPOBA |
| Psem9980318030 | Phenylpropanoid | POD | medium | pass | POD__00021__sp_Q9LEH3_PER15_IPOBA |