Plagiochila semidecurrens (plagiochila_semidecurrens)
Imported from atlas release summary for Plagiochila semidecurrens.
683
Candidate Genes
101
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Bryophytes
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
6
Pathways
Family Distribution
683
Candidate Genes
C4H
6.37%
BAHD
5.86%
C3'H/CYP98A
5.19%
POD
5.03%
CYP76
4.97%
4CL
4.86%
NMT
3.41%
IFS
3.02%
Other Families
61.31%
More Families (93)
UGT
53
2.96%
STR
52
2.9%
7DLGT
48
2.68%
UFGT
47
2.62%
DWF4/CYP90B1
40
2.23%
BR6OX2/CYP85A2
39
2.18%
IFR
37
2.07%
T3O
36
2.01%
F3H
34
1.9%
F3'H/CYP75B
31
1.73%
TRI/TRII
30
1.68%
GS
30
1.68%
PAL
27
1.51%
H6H
25
1.4%
G8O/G8H
23
1.28%
HCT
22
1.23%
COMT
22
1.23%
CAD
21
1.17%
SMT1/SMT2/SMT3
21
1.17%
LAMT
19
1.06%
IO
19
1.06%
RAS
17
0.95%
ANR
15
0.84%
CSE
15
0.84%
8HGO
14
0.78%
CNMT
14
0.78%
T16H
14
0.78%
LAC
14
0.78%
SGD
13
0.73%
FNS
13
0.73%
COR
11
0.61%
F3'5'H/CYP75A
11
0.61%
PYKS
10
0.56%
CYP80B1
10
0.56%
CCR
10
0.56%
CPD/CYP90A1
10
0.56%
PMT
9
0.5%
CAS
9
0.5%
BR6OX1/CYP85A1
9
0.5%
AACT
9
0.5%
CYP719
8
0.45%
16OMT
8
0.45%
NCS
7
0.39%
CODM/T6ODM
7
0.39%
CCoAOMT
7
0.39%
F5H/CYP84A
7
0.39%
TPS
7
0.39%
SLS
6
0.34%
TAT
6
0.34%
CYP71
6
0.34%
MVK
6
0.34%
BBE
5
0.28%
CHS
5
0.28%
CPR
5
0.28%
DWF5
5
0.28%
ISY
4
0.22%
CYP80F1
4
0.22%
MPO
4
0.22%
DFR
4
0.22%
HPPR
4
0.22%
CYP90D1
4
0.22%
PMK
4
0.22%
DXS
4
0.22%
CMK/IspE
4
0.22%
MCT/IspD
4
0.22%
TDC
3
0.17%
XMT_MXMT_DXMT
3
0.17%
ADC
3
0.17%
7DLH
3
0.17%
CHI
3
0.17%
ANS/LDOX
3
0.17%
DWF7
3
0.17%
SMO1/SMO2
3
0.17%
DET2
3
0.17%
SQS/FDFT1
3
0.17%
HMGR
3
0.17%
HDS/IspG
3
0.17%
GGPPS
3
0.17%
SQE
2
0.11%
ROT3/CYP90C1
2
0.11%
FK
2
0.11%
DWF1
2
0.11%
MVD
2
0.11%
MDS/IspF
2
0.11%
GES
1
0.06%
6OMT_4OMT_SOMT
1
0.06%
CPI1
1
0.06%
HYD1
1
0.06%
CYP51G1
1
0.06%
FPPS
1
0.06%
IDI
1
0.06%
DXR
1
0.06%
HMGS
1
0.06%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Candidate Genes | Families | Top family | Results |
|---|---|---|---|---|
| Phenylpropanoid pathway | 188 | 12 | POD (84) | View species results |
| Terpenoid pathway | 169 | 17 | BAHD (62) | View species results |
| Alkaloid pathway | 132 | 18 | NMT (21) | View species results |
| Flavonoid pathway | 85 | 10 | UFGT (42) | View species results |
| Rosmarinic acid pathway | 72 | 7 | C4H (35) | View species results |
| Steroid pathway | 37 | 13 | CAS (9) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Families | Candidate genes | Included families |
|---|---|---|---|
| P450/oxygenase | 24 | 633 | 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 3 | 144 | BAHD, HCT, RAS |
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: STR
| Gene | Pathway | Family | Confidence | Status | Best Target |
|---|---|---|---|---|---|
| Psem10900003890 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Psem1470008760 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Psem1870010590 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Psem2490012770 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Psem3563620057970 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Psem3590059720 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| Psem3979180092670 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| Psem3984050093620 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Psem4081250107560 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Psem4131690119110 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| Psem4177050121920 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| Psem4268140135360 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| Psem4304480144190 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Psem4306520144610 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Psem4332750153350 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Psem4334440154000 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| Psem4349870161270 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| Psem4353490163350 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Psem4354020163590 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Psem4359140166410 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Psem4370960172210 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Psem4372060172900 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Psem4372150172960 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Psem4372840173400 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Psem4373790174240 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Psem4373790174250 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Psem4383860180240 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Psem4386130182160 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| Psem4392060186150 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| Psem4412380204460 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Psem4415470208110 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| Psem4418740210920 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Psem4429090222210 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Psem4429130222280 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Psem4445280242280 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Psem4448220246490 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Psem4448630247150 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Psem4451450251110 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| Psem4455650257110 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Psem4456490258130 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Psem4459830262730 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Psem4462540266770 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Psem4465720271070 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| Psem4466530272010 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Psem4467930273610 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Psem4516070277390 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Psem4516080277410 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Psem4590280290 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Psem4692480288150 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| Psem4692490288230 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |