PlantSME Plant secondary metabolism enzyme database

Plagiochila semidecurrens (plagiochila_semidecurrens)

Imported from atlas release summary for Plagiochila semidecurrens.

962
Candidate Protein Records
683
Pathway-Level Records
1791
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Bryophytes
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Family Distribution
More Families (93)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Phenylpropanoid pathway 188 12 POD (84) View species results
Terpenoid pathway 169 17 BAHD (62) View species results
Alkaloid pathway 132 18 NMT (21) View species results
Flavonoid pathway 85 10 UFGT (42) View species results
Rosmarinic acid pathway 72 7 C4H (35) View species results
Steroid pathway 37 13 CAS (9) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 24 633 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 144 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Protein/Isoform Record Pathway Family Confidence Status
Psem4425590218000 Alkaloid T3O medium borderline
Psem4427800220610 Alkaloid T3O medium borderline
Psem4432900226210 Alkaloid T3O medium borderline
Psem4435550229610 Alkaloid T3O medium borderline
Psem4441310236760 Alkaloid T3O medium borderline
Psem4447290245040 Alkaloid T3O low borderline
Psem4454950256210 Alkaloid T3O low borderline
Psem4456620258430 Alkaloid T3O medium pass
Psem4459490262330 Alkaloid T3O medium borderline
Psem4460300263620 Alkaloid T3O medium borderline
Psem4460800264210 Alkaloid T3O low borderline
Psem4466130271700 Alkaloid T3O medium pass
Psem4552210278510 Alkaloid T3O medium borderline
Psem4552220278540 Alkaloid T3O medium borderline
Psem4598150280490 Alkaloid T3O medium pass
Psem4598160280500 Alkaloid T3O medium pass
Psem4730296350 Alkaloid T3O medium borderline
Psem7520306210 Alkaloid T3O medium borderline
Psem8770311270 Alkaloid T3O medium borderline
Psem3389500046530 Alkaloid TDC low borderline
Psem3966200090280 Alkaloid TDC low borderline
Psem7860307730 Alkaloid TDC low borderline
Psem10210000920 Alkaloid TRI/TRII medium pass
Psem3812510068430 Alkaloid TRI/TRII medium pass
Psem4071260104570 Alkaloid TRI/TRII low borderline
Psem4076500106300 Alkaloid TRI/TRII medium pass
Psem4175040121760 Alkaloid TRI/TRII medium pass
Psem4242200130530 Alkaloid TRI/TRII low borderline
Psem4270620135950 Alkaloid TRI/TRII medium pass
Psem4291330140810 Alkaloid TRI/TRII low borderline
Psem4300130142990 Alkaloid TRI/TRII medium pass
Psem4301890143500 Alkaloid TRI/TRII medium pass
Psem4312300146470 Alkaloid TRI/TRII medium pass
Psem4371590172540 Alkaloid TRI/TRII medium pass
Psem4371830172740 Alkaloid TRI/TRII low borderline
Psem4396650190600 Alkaloid TRI/TRII medium pass
Psem4411630203750 Alkaloid TRI/TRII low borderline
Psem4414910207540 Alkaloid TRI/TRII low borderline
Psem4415520208180 Alkaloid TRI/TRII low borderline
Psem4419960212280 Alkaloid TRI/TRII medium pass
Psem4432730225940 Alkaloid TRI/TRII medium pass
Psem4446700244430 Alkaloid TRI/TRII medium pass
Psem4460030263090 Alkaloid TRI/TRII medium pass
Psem4466620272110 Alkaloid TRI/TRII low borderline
Psem4468290274040 Alkaloid TRI/TRII low borderline
Psem4468780274620 Alkaloid TRI/TRII medium pass
Psem4470040275280 Alkaloid TRI/TRII low borderline
Psem4470050275300 Alkaloid TRI/TRII low borderline
Psem4538820278260 Alkaloid TRI/TRII medium pass
Psem4538830278270 Alkaloid TRI/TRII medium pass