PlantSME Plant secondary metabolism enzyme database

Plagiochila semidecurrens (plagiochila_semidecurrens)

Imported from atlas release summary for Plagiochila semidecurrens.

683
Candidate Genes
101
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Bryophytes
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (93)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Phenylpropanoid pathway 188 12 POD (84) View species results
Terpenoid pathway 169 17 BAHD (62) View species results
Alkaloid pathway 132 18 NMT (21) View species results
Flavonoid pathway 85 10 UFGT (42) View species results
Rosmarinic acid pathway 72 7 C4H (35) View species results
Steroid pathway 37 13 CAS (9) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 633 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 144 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Gene Pathway Family Confidence Status
Psem4344020158330 Alkaloid LAMT medium borderline
Psem4349490160960 Alkaloid LAMT medium borderline
Psem4393140187080 Alkaloid LAMT medium borderline
Psem4414420207100 Alkaloid LAMT medium pass
Psem4419370211670 Alkaloid LAMT medium pass
Psem4423010215300 Alkaloid LAMT medium pass
Psem4437260231530 Alkaloid LAMT low borderline
Psem4060101870 Alkaloid MPO low borderline
Psem4336610154900 Alkaloid MPO low borderline
Psem4432120225400 Alkaloid MPO medium pass
Psem4439410234030 Alkaloid MPO high pass
Psem4194410123950 Alkaloid NCS medium borderline
Psem4360960167320 Alkaloid NCS medium borderline
Psem4420370212850 Alkaloid NCS medium borderline
Psem4425790218150 Alkaloid NCS medium borderline
Psem4457580259620 Alkaloid NCS low borderline
Psem4718270295210 Alkaloid NCS medium borderline
Psem4718280295250 Alkaloid NCS medium borderline
Psem11190005290 Alkaloid NMT low borderline
Psem2450012600 Alkaloid NMT low borderline
Psem2830017660 Alkaloid NMT low borderline
Psem2980029370 Alkaloid NMT low borderline
Psem3050032010 Alkaloid NMT low borderline
Psem3889780078230 Alkaloid NMT medium pass
Psem4000094970 Alkaloid NMT low borderline
Psem4000094980 Alkaloid NMT medium borderline
Psem4106060113900 Alkaloid NMT medium borderline
Psem4217160126520 Alkaloid NMT medium borderline
Psem4239380129980 Alkaloid NMT low borderline
Psem4242390130570 Alkaloid NMT medium pass
Psem4243760130980 Alkaloid NMT medium pass
Psem4243760130990 Alkaloid NMT medium pass
Psem4297290142250 Alkaloid NMT medium borderline
Psem4302590143750 Alkaloid NMT low borderline
Psem4304530144220 Alkaloid NMT low borderline
Psem4317290147870 Alkaloid NMT medium pass
Psem4319690148760 Alkaloid NMT medium pass
Psem4338770155930 Alkaloid NMT medium pass
Psem4366970169880 Alkaloid NMT medium pass
Psem4370171590 Alkaloid NMT low borderline
Psem4370350171850 Alkaloid NMT low borderline
Psem4384660180950 Alkaloid NMT medium borderline
Psem4385220181400 Alkaloid NMT low borderline
Psem4390030184590 Alkaloid NMT medium pass
Psem4391830185950 Alkaloid NMT low borderline
Psem4395960189830 Alkaloid NMT medium borderline
Psem4408310200250 Alkaloid NMT medium borderline
Psem4412650204680 Alkaloid NMT medium borderline
Psem4417610209760 Alkaloid NMT medium borderline
Psem4422010214420 Alkaloid NMT medium borderline