PlantSME Plant secondary metabolism enzyme database

Plagiochila semidecurrens (plagiochila_semidecurrens)

Imported from atlas release summary for Plagiochila semidecurrens.

683
Candidate Genes
101
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Bryophytes
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (93)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Phenylpropanoid pathway 188 12 POD (84) View species results
Terpenoid pathway 169 17 BAHD (62) View species results
Alkaloid pathway 132 18 NMT (21) View species results
Flavonoid pathway 85 10 UFGT (42) View species results
Rosmarinic acid pathway 72 7 C4H (35) View species results
Steroid pathway 37 13 CAS (9) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 633 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 144 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Gene Pathway Family Confidence Status
Psem4355530164420 Alkaloid H6H low borderline
Psem4381620179020 Alkaloid H6H high pass
Psem4419200211460 Alkaloid H6H low borderline
Psem4421230213610 Alkaloid H6H low borderline
Psem4432860226110 Alkaloid H6H medium borderline
Psem4438920233470 Alkaloid H6H medium pass
Psem4440730236080 Alkaloid H6H medium borderline
Psem4445710242810 Alkaloid H6H low borderline
Psem4449530248660 Alkaloid H6H high pass
Psem4453100253640 Alkaloid H6H low borderline
Psem4455600257010 Alkaloid H6H low borderline
Psem4679000284630 Alkaloid H6H medium borderline
Psem4679010284650 Alkaloid H6H medium borderline
Psem6230302020 Alkaloid H6H high pass
Psem6740303800 Alkaloid H6H medium borderline
Psem3959470089070 Alkaloid IO medium borderline
Psem3972580091470 Alkaloid IO medium borderline
Psem4194840124020 Alkaloid IO medium borderline
Psem4290260140470 Alkaloid IO medium borderline
Psem4343350157950 Alkaloid IO medium borderline
Psem4386250182270 Alkaloid IO medium borderline
Psem4393680187680 Alkaloid IO high pass
Psem4426810219270 Alkaloid IO medium borderline
Psem4430780223700 Alkaloid IO medium borderline
Psem4437390231710 Alkaloid IO medium pass
Psem4438050232480 Alkaloid IO low borderline
Psem4439860234650 Alkaloid IO medium borderline
Psem4442170237990 Alkaloid IO medium borderline
Psem4449720248860 Alkaloid IO medium borderline
Psem4458410260660 Alkaloid IO medium borderline
Psem4712990293530 Alkaloid IO medium borderline
Psem4713000293560 Alkaloid IO medium borderline
Psem4723260296290 Alkaloid IO medium borderline
Psem4723270296310 Alkaloid IO medium borderline
Psem2500012890 Alkaloid ISY low borderline
Psem4336000154680 Alkaloid ISY medium pass
Psem4381200178790 Alkaloid ISY medium pass
Psem4408300200240 Alkaloid ISY medium pass
Psem11370006060 Alkaloid LAMT low borderline
Psem11370006070 Alkaloid LAMT medium borderline
Psem11370006100 Alkaloid LAMT medium borderline
Psem3530990055840 Alkaloid LAMT medium borderline
Psem3892860078980 Alkaloid LAMT medium pass
Psem4190310123120 Alkaloid LAMT medium borderline
Psem4263130134490 Alkaloid LAMT medium pass
Psem4291550140920 Alkaloid LAMT medium borderline
Psem4294610141650 Alkaloid LAMT medium pass
Psem4295690141900 Alkaloid LAMT low borderline
Psem4329110151940 Alkaloid LAMT medium borderline
Psem4332040153080 Alkaloid LAMT medium pass