PlantSME Plant secondary metabolism enzyme database

Plagiochila semidecurrens (plagiochila_semidecurrens)

Imported from atlas release summary for Plagiochila semidecurrens.

683
Candidate Genes
101
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Bryophytes
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (93)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Phenylpropanoid pathway 188 12 POD (84) View species results
Terpenoid pathway 169 17 BAHD (62) View species results
Alkaloid pathway 132 18 NMT (21) View species results
Flavonoid pathway 85 10 UFGT (42) View species results
Rosmarinic acid pathway 72 7 C4H (35) View species results
Steroid pathway 37 13 CAS (9) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 633 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 144 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Gene Pathway Family Confidence Status
Psem4399480192810 Alkaloid G8O/G8H medium borderline
Psem4407100199240 Alkaloid G8O/G8H medium borderline
Psem4414070206470 Alkaloid G8O/G8H low borderline
Psem4437850232180 Alkaloid G8O/G8H medium borderline
Psem4440390235510 Alkaloid G8O/G8H medium borderline
Psem4449720248870 Alkaloid G8O/G8H medium borderline
Psem4656680282310 Alkaloid G8O/G8H medium borderline
Psem6710303680 Alkaloid G8O/G8H medium borderline
Psem7580306490 Alkaloid G8O/G8H medium borderline
Psem4449790249020 Alkaloid GES low borderline
Psem10910003940 Alkaloid GS low borderline
Psem11250005590 Alkaloid GS low borderline
Psem3000029460 Alkaloid GS low borderline
Psem3970091080 Alkaloid GS high pass
Psem4085660108960 Alkaloid GS low borderline
Psem4222520127310 Alkaloid GS low borderline
Psem4227740128320 Alkaloid GS low borderline
Psem4302590143740 Alkaloid GS medium pass
Psem4326990151340 Alkaloid GS low borderline
Psem4345920159190 Alkaloid GS low borderline
Psem4349210160860 Alkaloid GS low borderline
Psem4402460195110 Alkaloid GS low borderline
Psem4412090204270 Alkaloid GS medium pass
Psem4418040210210 Alkaloid GS low borderline
Psem4428750221780 Alkaloid GS low borderline
Psem4429450222500 Alkaloid GS low borderline
Psem4433390226740 Alkaloid GS medium pass
Psem4437770232050 Alkaloid GS low borderline
Psem4444880241660 Alkaloid GS low borderline
Psem4445700242770 Alkaloid GS low borderline
Psem4453270254030 Alkaloid GS low borderline
Psem4461650265440 Alkaloid GS high pass
Psem4463420268100 Alkaloid GS high pass
Psem4463420268110 Alkaloid GS high pass
Psem4574960279510 Alkaloid GS low borderline
Psem4574970279520 Alkaloid GS low borderline
Psem4698660289930 Alkaloid GS low borderline
Psem4698670289950 Alkaloid GS low borderline
Psem4820296580 Alkaloid GS low borderline
Psem9260314140 Alkaloid GS low borderline
Psem4087140109440 Alkaloid H6H low borderline
Psem4125940118550 Alkaloid H6H medium borderline
Psem4237850129680 Alkaloid H6H medium borderline
Psem4239360129970 Alkaloid H6H low borderline
Psem4272550136540 Alkaloid H6H medium borderline
Psem4300830143240 Alkaloid H6H medium borderline
Psem4322240149690 Alkaloid H6H low borderline
Psem4327140151380 Alkaloid H6H medium borderline
Psem4348850160710 Alkaloid H6H medium borderline
Psem4354480163820 Alkaloid H6H low borderline