PlantSME Plant secondary metabolism enzyme database

Plagiochila semidecurrens (plagiochila_semidecurrens)

Imported from atlas release summary for Plagiochila semidecurrens.

683
Candidate Genes
101
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Bryophytes
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (93)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Phenylpropanoid pathway 188 12 POD (84) View species results
Terpenoid pathway 169 17 BAHD (62) View species results
Alkaloid pathway 132 18 NMT (21) View species results
Flavonoid pathway 85 10 UFGT (42) View species results
Rosmarinic acid pathway 72 7 C4H (35) View species results
Steroid pathway 37 13 CAS (9) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 633 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 144 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Alkaloid pathway
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Gene Pathway Family Confidence Status
Psem4422540214900 Alkaloid NMT medium pass
Psem4424830217460 Alkaloid NMT low borderline
Psem4428500221360 Alkaloid NMT low borderline
Psem4430440223290 Alkaloid NMT medium borderline
Psem4430930223930 Alkaloid NMT low borderline
Psem4431870225060 Alkaloid NMT medium pass
Psem4431870225070 Alkaloid NMT medium pass
Psem4433140226420 Alkaloid NMT low borderline
Psem4433450226870 Alkaloid NMT medium pass
Psem4434310228220 Alkaloid NMT low borderline
Psem4436790231050 Alkaloid NMT low borderline
Psem4438500232890 Alkaloid NMT medium pass
Psem4439070233680 Alkaloid NMT medium pass
Psem4441800237430 Alkaloid NMT low borderline
Psem4452190252270 Alkaloid NMT medium pass
Psem4455460256840 Alkaloid NMT low borderline
Psem4457860259920 Alkaloid NMT low borderline
Psem4458290260390 Alkaloid NMT medium borderline
Psem4458900261510 Alkaloid NMT medium pass
Psem4464950270130 Alkaloid NMT medium pass
Psem4465030270170 Alkaloid NMT medium borderline
Psem4466970272460 Alkaloid NMT medium pass
Psem4468140273930 Alkaloid NMT low borderline
Psem4672190283280 Alkaloid NMT low borderline
Psem4672200283320 Alkaloid NMT low borderline
Psem4701380290690 Alkaloid NMT medium pass
Psem4701390290730 Alkaloid NMT medium pass
Psem5620299400 Alkaloid NMT medium borderline
Psem7090304410 Alkaloid NMT low borderline
Psem4162770120430 Alkaloid PMT low borderline
Psem4228150128400 Alkaloid PMT low borderline
Psem4331780152930 Alkaloid PMT medium pass
Psem4337990155590 Alkaloid PMT low borderline
Psem4434010227780 Alkaloid PMT low borderline
Psem4448300246640 Alkaloid PMT medium borderline
Psem4455690257130 Alkaloid PMT low borderline
Psem4960297030 Alkaloid PMT low borderline
Psem6250302040 Alkaloid PMT low borderline
Psem11030004490 Alkaloid PYKS low borderline
Psem3858930073500 Alkaloid PYKS low borderline
Psem3943890083840 Alkaloid PYKS medium pass
Psem4104420113100 Alkaloid PYKS high pass
Psem4196360124300 Alkaloid PYKS low borderline
Psem4338670155860 Alkaloid PYKS low borderline
Psem4386160182190 Alkaloid PYKS low borderline
Psem4393400187370 Alkaloid PYKS low borderline
Psem4437360231640 Alkaloid PYKS low borderline
Psem4464760269860 Alkaloid PYKS high pass
Psem11460006270 Alkaloid SGD medium pass
Psem2885190019430 Alkaloid SGD low borderline