PlantSME Plant secondary metabolism enzyme database

Plagiochila semidecurrens (plagiochila_semidecurrens)

Imported from atlas release summary for Plagiochila semidecurrens.

962
Candidate Protein Records
683
Pathway-Level Records
1791
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Bryophytes
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Family Distribution
More Families (93)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Phenylpropanoid pathway 188 12 POD (84) View species results
Terpenoid pathway 169 17 BAHD (62) View species results
Alkaloid pathway 132 18 NMT (21) View species results
Flavonoid pathway 85 10 UFGT (42) View species results
Rosmarinic acid pathway 72 7 C4H (35) View species results
Steroid pathway 37 13 CAS (9) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 24 633 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 144 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Protein/Isoform Record Pathway Family Confidence Status
Psem3562720057890 Alkaloid SGD low borderline
Psem4368480170840 Alkaloid SGD medium pass
Psem4390980185300 Alkaloid SGD medium pass
Psem4421460213840 Alkaloid SGD medium pass
Psem4434360228300 Alkaloid SGD low borderline
Psem4434760228560 Alkaloid SGD medium pass
Psem4452070252100 Alkaloid SGD low borderline
Psem4671050283100 Alkaloid SGD medium pass
Psem4671060283120 Alkaloid SGD medium pass
Psem4673460283430 Alkaloid SGD medium pass
Psem6040301190 Alkaloid SGD low borderline
Psem4292040141080 Alkaloid SLS medium borderline
Psem4412460204520 Alkaloid SLS medium borderline
Psem4421230213600 Alkaloid SLS medium borderline
Psem4424150216850 Alkaloid SLS medium borderline
Psem4425380217840 Alkaloid SLS medium borderline
Psem5020297120 Alkaloid SLS medium borderline
Psem10900003890 Alkaloid STR low borderline
Psem1470008760 Alkaloid STR low borderline
Psem1870010590 Alkaloid STR low borderline
Psem2490012770 Alkaloid STR low borderline
Psem3563620057970 Alkaloid STR low borderline
Psem3590059720 Alkaloid STR medium pass
Psem3979180092670 Alkaloid STR medium pass
Psem3984050093620 Alkaloid STR low borderline
Psem4081250107560 Alkaloid STR low borderline
Psem4131690119110 Alkaloid STR medium pass
Psem4177050121920 Alkaloid STR medium pass
Psem4268140135360 Alkaloid STR medium pass
Psem4304480144190 Alkaloid STR low borderline
Psem4306520144610 Alkaloid STR low borderline
Psem4332750153350 Alkaloid STR low borderline
Psem4334440154000 Alkaloid STR medium pass
Psem4349870161270 Alkaloid STR medium pass
Psem4353490163350 Alkaloid STR low borderline
Psem4354020163590 Alkaloid STR low borderline
Psem4359140166410 Alkaloid STR low borderline
Psem4370960172210 Alkaloid STR low borderline
Psem4372060172900 Alkaloid STR low borderline
Psem4372150172960 Alkaloid STR low borderline
Psem4372840173400 Alkaloid STR low borderline
Psem4373790174240 Alkaloid STR low borderline
Psem4373790174250 Alkaloid STR low borderline
Psem4383860180240 Alkaloid STR low borderline
Psem4386130182160 Alkaloid STR medium pass
Psem4392060186150 Alkaloid STR medium pass
Psem4412380204460 Alkaloid STR low borderline
Psem4415470208110 Alkaloid STR medium pass
Psem4418740210920 Alkaloid STR low borderline
Psem4429090222210 Alkaloid STR low borderline