Polytrichastrum alpinum (polytrichastrum_alpinum)
Imported from atlas release summary for Polytrichastrum alpinum.
859
Candidate Protein Records
607
Pathway-Level Records
1738
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Bryophytes
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
- Download candidate protein FASTA for this species
Pathway Coverage
6
Pathways
Family Distribution
1738
Family-Level Calls
C4H
8.4%
C3'H/CYP98A
6.73%
CYP76
5.12%
BAHD
4.49%
PAL
4.14%
4CL
3.97%
POD
3.91%
IFS
3.39%
Other Families
59.84%
More Families (97)
NMT
57
3.28%
T3O
48
2.76%
DWF4/CYP90B1
48
2.76%
F3H
45
2.59%
F3'H/CYP75B
42
2.42%
STR
39
2.24%
BR6OX2/CYP85A2
36
2.07%
IFR
34
1.96%
UGT
32
1.84%
CODM/T6ODM
31
1.78%
7DLGT
28
1.61%
PYKS
27
1.55%
UFGT
27
1.55%
GS
26
1.5%
COMT
26
1.5%
G8O/G8H
22
1.27%
H6H
20
1.15%
T16H
20
1.15%
LAC
20
1.15%
TRI/TRII
18
1.04%
IO
17
0.98%
CHS
17
0.98%
CYP71
16
0.92%
F3'5'H/CYP75A
14
0.81%
HCT
14
0.81%
SMT1/SMT2/SMT3
14
0.81%
SGD
12
0.69%
FNS
12
0.69%
CPD/CYP90A1
12
0.69%
16OMT
11
0.63%
RAS
11
0.63%
BR6OX1/CYP85A1
11
0.63%
SLS
10
0.58%
CAD
10
0.58%
CSE
10
0.58%
7DLH
9
0.52%
CCR
9
0.52%
CAS
8
0.46%
BBE
7
0.4%
CNMT
7
0.4%
CYP90D1
7
0.4%
AACT
7
0.4%
DXS
7
0.4%
NCS
6
0.35%
COR
6
0.35%
ANR
6
0.35%
CPR
6
0.35%
MPO
5
0.29%
ANS/LDOX
5
0.29%
DFR
5
0.29%
SMO1/SMO2
5
0.29%
8HGO
4
0.23%
6OMT_4OMT_SOMT
4
0.23%
GES
4
0.23%
TAT
4
0.23%
SQS/FDFT1
4
0.23%
GGPPS
4
0.23%
PMT
3
0.17%
CYP719
3
0.17%
CHI
3
0.17%
F5H/CYP84A
3
0.17%
DWF1
3
0.17%
ROT3/CYP90C1
3
0.17%
DET2
3
0.17%
IDI
3
0.17%
MVK
3
0.17%
HMGR
3
0.17%
ISY
2
0.12%
LAMT
2
0.12%
ADC
2
0.12%
TDC
2
0.12%
CYP80B1
2
0.12%
ODC
2
0.12%
FLS
2
0.12%
CCoAOMT
2
0.12%
HPPR
2
0.12%
DWF5
2
0.12%
MVD
2
0.12%
FPPS
2
0.12%
MDS/IspF
2
0.12%
HMGS
2
0.12%
TYDC_DDC
1
0.06%
XMT_MXMT_DXMT
1
0.06%
CYP51G1
1
0.06%
FK
1
0.06%
CPI1
1
0.06%
SQE
1
0.06%
DWF7
1
0.06%
HYD1
1
0.06%
HDR/IspH
1
0.06%
GPPS
1
0.06%
TPS
1
0.06%
CMK/IspE
1
0.06%
PMK
1
0.06%
HDS/IspG
1
0.06%
DXR
1
0.06%
MCT/IspD
1
0.06%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Pathway-Level Records | Detected Families | Top family | Results |
|---|---|---|---|---|
| Phenylpropanoid pathway | 164 | 11 | POD (61) | View species results |
| Terpenoid pathway | 137 | 17 | BAHD (50) | View species results |
| Alkaloid pathway | 115 | 16 | NMT (17) | View species results |
| Rosmarinic acid pathway | 83 | 7 | C4H (37) | View species results |
| Flavonoid pathway | 78 | 7 | UFGT (24) | View species results |
| Steroid pathway | 30 | 12 | CAS (8) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Detected families | Assignment calls | Included families |
|---|---|---|---|
| P450/oxygenase | 23 | 735 | 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 3 | 103 | BAHD, HCT, RAS |
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Steroid pathway
| Protein/Isoform Record | Pathway | Family | Confidence | Status |
|---|---|---|---|---|
| Palpscaffold_60175310 | Steroid | SMT1/SMT2/SMT3 | medium | pass |
| Palpscaffold_70184010 | Steroid | SMT1/SMT2/SMT3 | low | borderline |
| Palpscaffold_70190660 | Steroid | SMT1/SMT2/SMT3 | low | borderline |
| Palpscaffold_70193250 | Steroid | SMT1/SMT2/SMT3 | low | borderline |
| Palpscaffold_70204050 | Steroid | SMT1/SMT2/SMT3 | medium | pass |
| Palpscaffold_70213210 | Steroid | SMT1/SMT2/SMT3 | low | borderline |
| Palpscaffold_70214650 | Steroid | SMT1/SMT2/SMT3 | medium | pass |
| Palpscaffold_50110460 | Steroid | SQE | medium | pass |
| Palpscaffold_20040390 | Steroid | SQS/FDFT1 | low | borderline |
| Palpscaffold_50122310 | Steroid | SQS/FDFT1 | low | borderline |
| Palpscaffold_50138630 | Steroid | SQS/FDFT1 | medium | pass |
| Palpscaffold_60172840 | Steroid | SQS/FDFT1 | medium | pass |