PlantSME Plant secondary metabolism enzyme database

Rhodiola crenulata (rhodiola_crenulata)

Imported from atlas release summary for Rhodiola crenulata.

1486
Candidate Protein Records
1104
Pathway-Level Records
2825
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Family Distribution
More Families (96)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 310 20 BAHD (138) View species results
Phenylpropanoid pathway 275 11 POD (128) View species results
Alkaloid pathway 201 19 NMT (36) View species results
Flavonoid pathway 137 11 UFGT (69) View species results
Rosmarinic acid pathway 95 7 C4H (36) View species results
Steroid pathway 86 10 CAS (32) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 24 1052 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 210 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Protein/Isoform Record Pathway Family Confidence Status
Rcrescaffold208720202600 Alkaloid NMT medium pass
Rcrescaffold21220203460 Alkaloid NMT medium pass
Rcrescaffold222410209130 Alkaloid NMT medium borderline
Rcrescaffold224600210050 Alkaloid NMT medium pass
Rcrescaffold22710211880 Alkaloid NMT medium pass
Rcrescaffold230212400 Alkaloid NMT low borderline
Rcrescaffold230212450 Alkaloid NMT low borderline
Rcrescaffold24640216730 Alkaloid NMT medium pass
Rcrescaffold24640216870 Alkaloid NMT low borderline
Rcrescaffold24640216960 Alkaloid NMT low borderline
Rcrescaffold282980226660 Alkaloid NMT medium pass
Rcrescaffold341170240770 Alkaloid NMT low borderline
Rcrescaffold36180244160 Alkaloid NMT medium borderline
Rcrescaffold36180245090 Alkaloid NMT medium borderline
Rcrescaffold37950249170 Alkaloid NMT low borderline
Rcrescaffold404610253170 Alkaloid NMT medium pass
Rcrescaffold47140262100 Alkaloid NMT medium pass
Rcrescaffold50180265460 Alkaloid NMT medium pass
Rcrescaffold50180265480 Alkaloid NMT medium pass
Rcrescaffold533870268400 Alkaloid NMT medium borderline
Rcrescaffold62060281350 Alkaloid NMT medium borderline
Rcrescaffold64370284020 Alkaloid NMT medium pass
Rcrescaffold64580285820 Alkaloid NMT low borderline
Rcrescaffold65330287280 Alkaloid NMT medium pass
Rcrescaffold68950290820 Alkaloid NMT medium pass
Rcrescaffold75350296300 Alkaloid NMT low borderline
Rcrescaffold80550302240 Alkaloid NMT medium pass
Rcrescaffold850306000 Alkaloid NMT medium pass
Rcrescaffold87950308430 Alkaloid NMT medium pass
Rcrescaffold1266820016710 Alkaloid PMT medium borderline
Rcrescaffold1348370031370 Alkaloid PMT low borderline
Rcrescaffold1383260057840 Alkaloid PMT medium borderline
Rcrescaffold1384580068580 Alkaloid PMT medium pass
Rcrescaffold1386280092840 Alkaloid PMT medium pass
Rcrescaffold139410161340 Alkaloid PMT medium pass
Rcrescaffold139410161350 Alkaloid PMT medium pass
Rcrescaffold1395560171840 Alkaloid PMT low borderline
Rcrescaffold2930228250 Alkaloid PMT low borderline
Rcrescaffold2930228260 Alkaloid PMT medium pass
Rcrescaffold309020234800 Alkaloid PMT low borderline
Rcrescaffold334980239800 Alkaloid PMT low borderline
Rcrescaffold62060280740 Alkaloid PMT low borderline
Rcrescaffold103330002250 Alkaloid PYKS low borderline
Rcrescaffold106430005120 Alkaloid PYKS low borderline
Rcrescaffold107680005460 Alkaloid PYKS low borderline
Rcrescaffold1349210031750 Alkaloid PYKS low borderline
Rcrescaffold1365760041860 Alkaloid PYKS low borderline
Rcrescaffold1378580048650 Alkaloid PYKS low borderline
Rcrescaffold1383730059760 Alkaloid PYKS low borderline
Rcrescaffold1384860074310 Alkaloid PYKS high pass