PlantSME Plant secondary metabolism enzyme database

Rhodiola crenulata (rhodiola_crenulata)

Imported from atlas release summary for Rhodiola crenulata.

1104
Candidate Genes
104
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (96)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 310 20 BAHD (138) View species results
Phenylpropanoid pathway 275 11 POD (128) View species results
Alkaloid pathway 201 19 NMT (36) View species results
Flavonoid pathway 137 11 UFGT (69) View species results
Rosmarinic acid pathway 95 7 C4H (36) View species results
Steroid pathway 86 10 CAS (32) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1052 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 210 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: CAD
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Gene Pathway Family Confidence Status Best Target
Rcrescaffold115390009180 Phenylpropanoid CAD low borderline CAD__00006__sp_I1ZHA5_CAD_CHAFM
Rcrescaffold126750017240 Phenylpropanoid CAD low borderline CAD__00003__sp_A0A2P1GIW4_REDX1_CATRO
Rcrescaffold1305090023770 Phenylpropanoid CAD low borderline CAD__00006__sp_I1ZHA5_CAD_CHAFM
Rcrescaffold1305090023800 Phenylpropanoid CAD low borderline CAD__00006__sp_I1ZHA5_CAD_CHAFM
Rcrescaffold1364970040640 Phenylpropanoid CAD medium borderline CAD__00005__sp_G7IYC1_CAD2_MEDTR
Rcrescaffold1381770050420 Phenylpropanoid CAD medium pass CAD__00002__sp_A0A0U4AHM6_CAD2_RAUSE
Rcrescaffold1384860074040 Phenylpropanoid CAD low borderline CAD__00015__sp_Q6ZHS4_CADH2_ORYSJ
Rcrescaffold1385820088900 Phenylpropanoid CAD medium borderline CAD__00005__sp_G7IYC1_CAD2_MEDTR
Rcrescaffold1388320109770 Phenylpropanoid CAD medium pass CAD__00002__sp_A0A0U4AHM6_CAD2_RAUSE
Rcrescaffold1388320109780 Phenylpropanoid CAD medium pass CAD__00002__sp_A0A0U4AHM6_CAD2_RAUSE
Rcrescaffold1388460110440 Phenylpropanoid CAD low borderline CAD__00003__sp_A0A2P1GIW4_REDX1_CATRO
Rcrescaffold1390570126840 Phenylpropanoid CAD medium pass CAD__00008__sp_O49482_CADH5_ARATH
Rcrescaffold1391810146120 Phenylpropanoid CAD medium pass CAD__00002__sp_A0A0U4AHM6_CAD2_RAUSE
Rcrescaffold1393180154580 Phenylpropanoid CAD low borderline CAD__00005__sp_G7IYC1_CAD2_MEDTR
Rcrescaffold1393530155920 Phenylpropanoid CAD medium pass CAD__00002__sp_A0A0U4AHM6_CAD2_RAUSE
Rcrescaffold1393830157630 Phenylpropanoid CAD low borderline CAD__00011__sp_Q02971_CADH7_ARATH
Rcrescaffold234030213840 Phenylpropanoid CAD low borderline CAD__00006__sp_I1ZHA5_CAD_CHAFM
Rcrescaffold236580214570 Phenylpropanoid CAD medium borderline CAD__00005__sp_G7IYC1_CAD2_MEDTR
Rcrescaffold2930228530 Phenylpropanoid CAD medium pass CAD__00002__sp_A0A0U4AHM6_CAD2_RAUSE
Rcrescaffold295330229920 Phenylpropanoid CAD low borderline CAD__00011__sp_Q02971_CADH7_ARATH
Rcrescaffold334690239790 Phenylpropanoid CAD medium pass CAD__00011__sp_Q02971_CADH7_ARATH
Rcrescaffold43180256740 Phenylpropanoid CAD low borderline CAD__00012__sp_Q02972_CADH8_ARATH
Rcrescaffold5230267460 Phenylpropanoid CAD medium pass CAD__00014__sp_Q2KNL5_CADH1_OCIBA
Rcrescaffold640283010 Phenylpropanoid CAD low borderline CAD__00005__sp_G7IYC1_CAD2_MEDTR
Rcrescaffold81400302860 Phenylpropanoid CAD medium pass CAD__00004__sp_B5LAT8_CAD1_CAPAN
Rcrescaffold81400302870 Phenylpropanoid CAD medium pass CAD__00004__sp_B5LAT8_CAD1_CAPAN