PlantSME Plant secondary metabolism enzyme database

Rhodiola crenulata (rhodiola_crenulata)

Imported from atlas release summary for Rhodiola crenulata.

1104
Candidate Genes
104
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Site group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Site group 117
Eudicots
Current group 495
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
Terpenoid pathway 28.08% Phenylpropanoid pathway 24.91% Alkaloid pathway 18.21% Flavonoid pathway 12.41% Rosmarinic acid pathway 8.61% Steroid pathway 7.79%
Family Distribution
BAHD 6.41% C4H 5.84% C3'H/CYP98A 5.84% POD 5.06% 4CL 4.57% IFS 3.93% CYP76 3.5% T3O 3.19%
Other Families 61.66%
More Families (96)
F3H 89 3.15% UGT 86 3.04% UFGT 76 2.69% 7DLGT 75 2.65% NMT 71 2.51% STR 56 1.98% F3'H/CYP75B 55 1.95% BR6OX2/CYP85A2 55 1.95% CODM/T6ODM 53 1.88% SMT1/SMT2/SMT3 50 1.77% DWF4/CYP90B1 48 1.7% H6H 45 1.59% CSE 43 1.52% CYP71 42 1.49% CAS 36 1.27% IFR 35 1.24% LAC 35 1.24% PYKS 33 1.17% TRI/TRII 33 1.17% SLS 28 0.99% CAD 26 0.92% CYP90D1 25 0.88% CCR 24 0.85% SGD 23 0.81% T16H 23 0.81% FNS 20 0.71% IO 19 0.67% 7DLH 19 0.67% GS 19 0.67% G8O/G8H 18 0.64% PAL 18 0.64% RAS 17 0.6% ANR 16 0.57% NCS 15 0.53% TAT 14 0.5% CPD/CYP90A1 14 0.5% BR6OX1/CYP85A1 14 0.5% TPS 14 0.5% BBE 13 0.46% GES 13 0.46% CNMT 13 0.46% PMT 13 0.46% F3'5'H/CYP75A 13 0.46% F5H/CYP84A 13 0.46% COMT 13 0.46% COR 12 0.42% DFR 12 0.42% ANS/LDOX 12 0.42% HCT 12 0.42% CYP51G1 12 0.42% SQE 11 0.39% MVK 11 0.39% ROT3/CYP90C1 10 0.35% 8HGO 9 0.32% CPR 9 0.32% DET2 9 0.32% HMGR 9 0.32% FPPS 9 0.32% 16OMT 8 0.28% GGPPS 8 0.28% HPPR 7 0.25% TYDC_DDC 6 0.21% CYP80B1 6 0.21% CHS 6 0.21% CCoAOMT 6 0.21% SQS/FDFT1 6 0.21% AACT 6 0.21% LAMT 5 0.18% DXS 5 0.18% CYP80F1 4 0.14% CYP719 4 0.14% FK 4 0.14% SMO1/SMO2 4 0.14% IDI 4 0.14% MPO 3 0.11% ISY 3 0.11% CHI 3 0.11% MCT/IspD 3 0.11% DXR 3 0.11% PMK 3 0.11% MVD 3 0.11% TDC 2 0.07% ADC 2 0.07% FLS 2 0.07% DWF5 2 0.07% DWF1 2 0.07% HMGS 2 0.07% HDR/IspH 2 0.07% XMT_MXMT_DXMT 1 0.04% DWF7 1 0.04% CPI1 1 0.04% HYD1 1 0.04% HDS/IspG 1 0.04% CMK/IspE 1 0.04% GPPS 1 0.04% MDS/IspF 1 0.04%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 310 20 BAHD (138) View species results
Phenylpropanoid pathway 275 11 POD (128) View species results
Alkaloid pathway 201 19 NMT (36) View species results
Flavonoid pathway 137 11 UFGT (69) View species results
Rosmarinic acid pathway 95 7 C4H (36) View species results
Steroid pathway 86 10 CAS (32) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1052 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 210 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: TYDC_DDC
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Gene Pathway Family Confidence Status Best Target
Rcrescaffold118630012430 Alkaloid TYDC_DDC medium borderline TYDC_DDC__00002__sp_O82415_TYDC_PAPSO
Rcrescaffold1367560042330 Alkaloid TYDC_DDC medium borderline TYDC_DDC__00002__sp_O82415_TYDC_PAPSO
Rcrescaffold1384860073870 Alkaloid TYDC_DDC medium borderline TYDC_DDC__00005__sp_Q9M0G4_TYDC2_ARATH
Rcrescaffold1386130091150 Alkaloid TYDC_DDC medium borderline TYDC_DDC__00003__sp_P17770_TDC_CATRO
Rcrescaffold15050180020 Alkaloid TYDC_DDC medium borderline TYDC_DDC__00003__sp_P17770_TDC_CATRO
Rcrescaffold495320264150 Alkaloid TYDC_DDC medium borderline TYDC_DDC__00002__sp_O82415_TYDC_PAPSO