PlantSME Plant secondary metabolism enzyme database

Rhodiola crenulata (rhodiola_crenulata)

Imported from atlas release summary for Rhodiola crenulata.

1104
Candidate Genes
104
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (96)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 310 20 BAHD (138) View species results
Phenylpropanoid pathway 275 11 POD (128) View species results
Alkaloid pathway 201 19 NMT (36) View species results
Flavonoid pathway 137 11 UFGT (69) View species results
Rosmarinic acid pathway 95 7 C4H (36) View species results
Steroid pathway 86 10 CAS (32) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1052 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 210 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: CSE
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Gene Pathway Family Confidence Status Best Target
Rcrescaffold11630009690 Phenylpropanoid CSE medium pass CSE__00001__sp_P0DO76_4HBS_VANPL
Rcrescaffold130170022750 Phenylpropanoid CSE medium pass CSE__00001__sp_P0DO76_4HBS_VANPL
Rcrescaffold1348370031410 Phenylpropanoid CSE medium pass CSE__00001__sp_P0DO76_4HBS_VANPL
Rcrescaffold1355390034480 Phenylpropanoid CSE medium pass CSE__00001__sp_P0DO76_4HBS_VANPL
Rcrescaffold1374450045630 Phenylpropanoid CSE medium pass CSE__00001__sp_P0DO76_4HBS_VANPL
Rcrescaffold1383460058960 Phenylpropanoid CSE medium pass CSE__00001__sp_P0DO76_4HBS_VANPL
Rcrescaffold1384140061440 Phenylpropanoid CSE medium pass CSE__00001__sp_P0DO76_4HBS_VANPL
Rcrescaffold1384710071570 Phenylpropanoid CSE medium pass CSE__00001__sp_P0DO76_4HBS_VANPL
Rcrescaffold1385290082900 Phenylpropanoid CSE low borderline CSE__00001__sp_P0DO76_4HBS_VANPL
Rcrescaffold1388720112030 Phenylpropanoid CSE medium pass CSE__00001__sp_P0DO76_4HBS_VANPL
Rcrescaffold1389870118390 Phenylpropanoid CSE medium pass CSE__00001__sp_P0DO76_4HBS_VANPL
Rcrescaffold1389890118680 Phenylpropanoid CSE medium pass CSE__00001__sp_P0DO76_4HBS_VANPL
Rcrescaffold1390670128380 Phenylpropanoid CSE medium pass CSE__00001__sp_P0DO76_4HBS_VANPL
Rcrescaffold1391140133670 Phenylpropanoid CSE medium pass CSE__00002__sp_Q9C942_CSE_ARATH
Rcrescaffold1391780145940 Phenylpropanoid CSE medium pass CSE__00001__sp_P0DO76_4HBS_VANPL
Rcrescaffold1391910147730 Phenylpropanoid CSE medium pass CSE__00001__sp_P0DO76_4HBS_VANPL
Rcrescaffold1394380163330 Phenylpropanoid CSE medium pass CSE__00001__sp_P0DO76_4HBS_VANPL
Rcrescaffold1395560171860 Phenylpropanoid CSE medium pass CSE__00001__sp_P0DO76_4HBS_VANPL
Rcrescaffold1395830173120 Phenylpropanoid CSE medium pass CSE__00001__sp_P0DO76_4HBS_VANPL
Rcrescaffold14000174580 Phenylpropanoid CSE medium pass CSE__00001__sp_P0DO76_4HBS_VANPL
Rcrescaffold160720184140 Phenylpropanoid CSE medium pass CSE__00001__sp_P0DO76_4HBS_VANPL
Rcrescaffold178340191650 Phenylpropanoid CSE medium pass CSE__00001__sp_P0DO76_4HBS_VANPL
Rcrescaffold201770200270 Phenylpropanoid CSE medium pass CSE__00001__sp_P0DO76_4HBS_VANPL
Rcrescaffold21640204680 Phenylpropanoid CSE medium pass CSE__00002__sp_Q9C942_CSE_ARATH
Rcrescaffold22710211590 Phenylpropanoid CSE low borderline CSE__00001__sp_P0DO76_4HBS_VANPL
Rcrescaffold244540216410 Phenylpropanoid CSE medium pass CSE__00002__sp_Q9C942_CSE_ARATH
Rcrescaffold24640216690 Phenylpropanoid CSE medium pass CSE__00001__sp_P0DO76_4HBS_VANPL
Rcrescaffold303610232400 Phenylpropanoid CSE medium pass CSE__00001__sp_P0DO76_4HBS_VANPL
Rcrescaffold303610232410 Phenylpropanoid CSE medium pass CSE__00001__sp_P0DO76_4HBS_VANPL
Rcrescaffold305530233630 Phenylpropanoid CSE medium pass CSE__00001__sp_P0DO76_4HBS_VANPL
Rcrescaffold36180245190 Phenylpropanoid CSE medium pass CSE__00002__sp_Q9C942_CSE_ARATH
Rcrescaffold36770247110 Phenylpropanoid CSE low borderline CSE__00001__sp_P0DO76_4HBS_VANPL
Rcrescaffold370740247620 Phenylpropanoid CSE medium pass CSE__00001__sp_P0DO76_4HBS_VANPL
Rcrescaffold388750250840 Phenylpropanoid CSE low borderline CSE__00001__sp_P0DO76_4HBS_VANPL
Rcrescaffold41970254980 Phenylpropanoid CSE medium pass CSE__00001__sp_P0DO76_4HBS_VANPL
Rcrescaffold41970254990 Phenylpropanoid CSE medium pass CSE__00001__sp_P0DO76_4HBS_VANPL
Rcrescaffold45350258960 Phenylpropanoid CSE medium pass CSE__00001__sp_P0DO76_4HBS_VANPL
Rcrescaffold495320264160 Phenylpropanoid CSE medium pass CSE__00001__sp_P0DO76_4HBS_VANPL
Rcrescaffold539600269500 Phenylpropanoid CSE medium pass CSE__00001__sp_P0DO76_4HBS_VANPL
Rcrescaffold54690270440 Phenylpropanoid CSE medium pass CSE__00002__sp_Q9C942_CSE_ARATH
Rcrescaffold61350279960 Phenylpropanoid CSE medium pass CSE__00002__sp_Q9C942_CSE_ARATH
Rcrescaffold88540308620 Phenylpropanoid CSE medium pass CSE__00001__sp_P0DO76_4HBS_VANPL
Rcrescaffold90010310390 Phenylpropanoid CSE medium pass CSE__00001__sp_P0DO76_4HBS_VANPL