Rhodiola crenulata (rhodiola_crenulata)

This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.

Pathway Coverage

6 Pathways

Terpenoid pathway 28.08% Phenylpropanoid pathway 24.91% Alkaloid pathway 18.21% Flavonoid pathway 12.41% Rosmarinic acid pathway 8.61% Steroid pathway 7.79%

Family Distribution

1104 Candidate Genes

BAHD 6.41% C4H 5.84% C3'H/CYP98A 5.84% POD 5.06% 4CL 4.57% IFS 3.93% CYP76 3.5% T3O 3.19%

Other Families 61.66%

More Families (96)

F3H 89 3.15% UGT 86 3.04% UFGT 76 2.69% 7DLGT 75 2.65% NMT 71 2.51% STR 56 1.98% F3'H/CYP75B 55 1.95% BR6OX2/CYP85A2 55 1.95% CODM/T6ODM 53 1.88% SMT1/SMT2/SMT3 50 1.77% DWF4/CYP90B1 48 1.7% H6H 45 1.59% CSE 43 1.52% CYP71 42 1.49% CAS 36 1.27% IFR 35 1.24% LAC 35 1.24% PYKS 33 1.17% TRI/TRII 33 1.17% SLS 28 0.99% CAD 26 0.92% CYP90D1 25 0.88% CCR 24 0.85% SGD 23 0.81% T16H 23 0.81% FNS 20 0.71% IO 19 0.67% 7DLH 19 0.67% GS 19 0.67% G8O/G8H 18 0.64% PAL 18 0.64% RAS 17 0.6% ANR 16 0.57% NCS 15 0.53% TAT 14 0.5% CPD/CYP90A1 14 0.5% BR6OX1/CYP85A1 14 0.5% TPS 14 0.5% BBE 13 0.46% GES 13 0.46% CNMT 13 0.46% PMT 13 0.46% F3'5'H/CYP75A 13 0.46% F5H/CYP84A 13 0.46% COMT 13 0.46% COR 12 0.42% DFR 12 0.42% ANS/LDOX 12 0.42% HCT 12 0.42% CYP51G1 12 0.42% SQE 11 0.39% MVK 11 0.39% ROT3/CYP90C1 10 0.35% 8HGO 9 0.32% CPR 9 0.32% DET2 9 0.32% HMGR 9 0.32% FPPS 9 0.32% 16OMT 8 0.28% GGPPS 8 0.28% HPPR 7 0.25% TYDC_DDC 6 0.21% CYP80B1 6 0.21% CHS 6 0.21% CCoAOMT 6 0.21% SQS/FDFT1 6 0.21% AACT 6 0.21% LAMT 5 0.18% DXS 5 0.18% CYP80F1 4 0.14% CYP719 4 0.14% FK 4 0.14% SMO1/SMO2 4 0.14% IDI 4 0.14% MPO 3 0.11% ISY 3 0.11% CHI 3 0.11% MCT/IspD 3 0.11% DXR 3 0.11% PMK 3 0.11% MVD 3 0.11% TDC 2 0.07% ADC 2 0.07% FLS 2 0.07% DWF5 2 0.07% DWF1 2 0.07% HMGS 2 0.07% HDR/IspH 2 0.07% XMT_MXMT_DXMT 1 0.04% DWF7 1 0.04% CPI1 1 0.04% HYD1 1 0.04% HDS/IspG 1 0.04% CMK/IspE 1 0.04% GPPS 1 0.04% MDS/IspF 1 0.04%

Species Pathway Results

The links below show identification results for this species within each pathway, instead of opening the global pathway overview.

Pathway	Candidate Genes	Families	Top family	Results
Terpenoid pathway	310	20	BAHD (138)	View species results
Phenylpropanoid pathway	275	11	POD (128)	View species results
Alkaloid pathway	201	19	NMT (36)	View species results
Flavonoid pathway	137	11	UFGT (69)	View species results
Rosmarinic acid pathway	95	7	C4H (36)	View species results
Steroid pathway	86	10	CAS (32)	View species results

Broad Catalytic Groups

P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.

Catalytic group	Families	Candidate genes	Included families
P450/oxygenase	24	1052	7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase	3	210	BAHD, HCT, RAS

Identification Result List

Search the public identification results for this species; click pathway or family legends above to narrow within this species.

Current family filter: CCR

Gene	Pathway	Family	Confidence	Status	Best Target
Rcrescaffold103650002770	Phenylpropanoid	CCR	medium	borderline	CCR__00001__sp_A0A059TC02_CCR1_PETHY
Rcrescaffold1348330031230	Phenylpropanoid	CCR	medium	pass	CCR__00005__sp_Q0JKZ0_SNL6_ORYSJ
Rcrescaffold1351420032810	Phenylpropanoid	CCR	medium	pass	CCR__00005__sp_Q0JKZ0_SNL6_ORYSJ
Rcrescaffold1355960034910	Phenylpropanoid	CCR	low	borderline	CCR__00005__sp_Q0JKZ0_SNL6_ORYSJ
Rcrescaffold1355960034990	Phenylpropanoid	CCR	medium	borderline	CCR__00004__sp_G7JEE5_CCR2_MEDTR
Rcrescaffold1376350047320	Phenylpropanoid	CCR	medium	borderline	CCR__00001__sp_A0A059TC02_CCR1_PETHY
Rcrescaffold1384660070030	Phenylpropanoid	CCR	medium	borderline	CCR__00002__sp_A0A072VDF2_CCR1_MEDTR
Rcrescaffold1385050078640	Phenylpropanoid	CCR	medium	borderline	CCR__00001__sp_A0A059TC02_CCR1_PETHY
Rcrescaffold1386000090010	Phenylpropanoid	CCR	medium	pass	CCR__00005__sp_Q0JKZ0_SNL6_ORYSJ
Rcrescaffold1387400102750	Phenylpropanoid	CCR	medium	pass	CCR__00002__sp_A0A072VDF2_CCR1_MEDTR
Rcrescaffold1388300109570	Phenylpropanoid	CCR	medium	borderline	CCR__00007__sp_Q9CA28_TKPR2_ARATH
Rcrescaffold1390030120170	Phenylpropanoid	CCR	medium	pass	CCR__00001__sp_A0A059TC02_CCR1_PETHY
Rcrescaffold1390550125640	Phenylpropanoid	CCR	medium	borderline	CCR__00007__sp_Q9CA28_TKPR2_ARATH
Rcrescaffold1391970148370	Phenylpropanoid	CCR	low	borderline	CCR__00006__sp_Q6K9A2_CCR1_ORYSJ
Rcrescaffold1392960153460	Phenylpropanoid	CCR	medium	borderline	CCR__00001__sp_A0A059TC02_CCR1_PETHY
Rcrescaffold1394050160360	Phenylpropanoid	CCR	low	borderline	CCR__00006__sp_Q6K9A2_CCR1_ORYSJ
Rcrescaffold14450177720	Phenylpropanoid	CCR	low	borderline	CCR__00004__sp_G7JEE5_CCR2_MEDTR
Rcrescaffold183720194770	Phenylpropanoid	CCR	medium	pass	CCR__00005__sp_Q0JKZ0_SNL6_ORYSJ
Rcrescaffold19170197300	Phenylpropanoid	CCR	medium	pass	CCR__00005__sp_Q0JKZ0_SNL6_ORYSJ
Rcrescaffold192440197750	Phenylpropanoid	CCR	medium	borderline	CCR__00001__sp_A0A059TC02_CCR1_PETHY
Rcrescaffold208720202670	Phenylpropanoid	CCR	low	borderline	CCR__00004__sp_G7JEE5_CCR2_MEDTR
Rcrescaffold2190207170	Phenylpropanoid	CCR	medium	borderline	CCR__00004__sp_G7JEE5_CCR2_MEDTR
Rcrescaffold27620225090	Phenylpropanoid	CCR	low	borderline	CCR__00006__sp_Q6K9A2_CCR1_ORYSJ
Rcrescaffold41970255200	Phenylpropanoid	CCR	medium	pass	CCR__00004__sp_G7JEE5_CCR2_MEDTR