PlantSME Plant secondary metabolism enzyme database

Boechera retrofracta (boechera_retrofracta)

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Imported from atlas release summary for Boechera retrofracta.

1602
Candidate Protein Records
1221
Pathway-Level Records
3211
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Common name
/
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Family Distribution
More Families (96)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 372 19 BAHD (158) View species results
Alkaloid pathway 272 19 SGD (46) View species results
Phenylpropanoid pathway 257 11 POD (121) View species results
Flavonoid pathway 143 8 UFGT (95) View species results
Rosmarinic acid pathway 97 7 C4H (43) View species results
Steroid pathway 80 13 SMT1/SMT2/SMT3 (34) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 24 1239 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 244 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Protein/Isoform Record Pathway Family Confidence Status
BOERETT00050430 Phenylpropanoid CAD low borderline
BOERETT00056715 Phenylpropanoid CAD low borderline
BOERETT00057664 Phenylpropanoid CAD low borderline
BOERETT00059140 Phenylpropanoid CAD low borderline
BOERETT00060660 Phenylpropanoid CAD low borderline
BOERETT00061239 Phenylpropanoid CAD medium borderline
BOERETT00003407 Phenylpropanoid CCR medium borderline
BOERETT00006053 Phenylpropanoid CCR medium borderline
BOERETT00009100 Phenylpropanoid CCR medium borderline
BOERETT00010252 Phenylpropanoid CCR medium borderline
BOERETT00017095 Phenylpropanoid CCR medium pass
BOERETT00024395 Phenylpropanoid CCR medium pass
BOERETT00026000 Phenylpropanoid CCR medium borderline
BOERETT00026268 Phenylpropanoid CCR low borderline
BOERETT00028224 Phenylpropanoid CCR medium borderline
BOERETT00028754 Phenylpropanoid CCR medium pass
BOERETT00030869 Phenylpropanoid CCR low borderline
BOERETT00035619 Phenylpropanoid CCR medium borderline
BOERETT00037611 Phenylpropanoid CCR medium borderline
BOERETT00043308 Phenylpropanoid CCR low borderline
BOERETT00044889 Phenylpropanoid CCR medium borderline
BOERETT00046203 Phenylpropanoid CCR medium borderline
BOERETT00046823 Phenylpropanoid CCR medium borderline
BOERETT00054375 Phenylpropanoid CCR medium borderline
BOERETT00061338 Phenylpropanoid CCR low borderline
BOERETT00006113 Phenylpropanoid CCoAOMT medium pass
BOERETT00008940 Phenylpropanoid CCoAOMT medium pass
BOERETT00008943 Phenylpropanoid CCoAOMT medium pass
BOERETT00013693 Phenylpropanoid CCoAOMT medium pass
BOERETT00013695 Phenylpropanoid CCoAOMT medium pass
BOERETT00044716 Phenylpropanoid CCoAOMT medium pass
BOERETT00045635 Phenylpropanoid CCoAOMT medium pass
BOERETT00003712 Phenylpropanoid COMT medium pass
BOERETT00005467 Phenylpropanoid COMT medium pass
BOERETT00005468 Phenylpropanoid COMT medium pass
BOERETT00005469 Phenylpropanoid COMT medium pass
BOERETT00010293 Phenylpropanoid COMT medium pass
BOERETT00017638 Phenylpropanoid COMT medium pass
BOERETT00022181 Phenylpropanoid COMT medium pass
BOERETT00026456 Phenylpropanoid COMT medium pass
BOERETT00032781 Phenylpropanoid COMT medium pass
BOERETT00033881 Phenylpropanoid COMT low borderline
BOERETT00034985 Phenylpropanoid COMT low borderline
BOERETT00035029 Phenylpropanoid COMT medium pass
BOERETT00035038 Phenylpropanoid COMT medium pass
BOERETT00035757 Phenylpropanoid COMT medium pass
BOERETT00044434 Phenylpropanoid COMT medium pass
BOERETT00044435 Phenylpropanoid COMT medium pass
BOERETT00044854 Phenylpropanoid COMT medium pass
BOERETT00044857 Phenylpropanoid COMT medium pass