Bonia amplexicaulis (bonia_amplexicaulis)

This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.

Pathway Coverage

6 Pathways

Terpenoid pathway 28.32% Phenylpropanoid pathway 24.17% Alkaloid pathway 20.2% Flavonoid pathway 12.9% Rosmarinic acid pathway 8.94% Steroid pathway 5.47%

Family Distribution

2193 Candidate Genes

BAHD 6.9% POD 6.05% C3'H/CYP98A 5.34% C4H 5.14% UGT 4.4% 4CL 4.11% 7DLGT 3.83% UFGT 3.65%

Other Families 60.57%

More Families (96)

IFS 157 3.17% T3O 147 2.96% CYP76 146 2.94% F3H 131 2.64% DWF4/CYP90B1 120 2.42% NMT 115 2.32% F3'H/CYP75B 105 2.12% STR 98 1.98% BR6OX2/CYP85A2 89 1.8% SMT1/SMT2/SMT3 85 1.71% CYP71 74 1.49% CODM/T6ODM 70 1.41% RAS 68 1.37% PMT 65 1.31% PYKS 61 1.23% H6H 61 1.23% CAD 59 1.19% LAC 59 1.19% HCT 59 1.19% CSE 57 1.15% TRI/TRII 51 1.03% TPS 50 1.01% CAS 47 0.95% SLS 46 0.93% G8O/G8H 42 0.85% PAL 42 0.85% IFR 40 0.81% CCR 37 0.75% GS 36 0.73% COMT 36 0.73% T16H 35 0.71% SGD 33 0.67% GES 33 0.67% ANR 33 0.67% 16OMT 29 0.58% CYP90D1 27 0.54% IO 25 0.5% NCS 25 0.5% 8HGO 23 0.46% BR6OX1/CYP85A1 23 0.46% FNS 21 0.42% COR 20 0.4% BBE 20 0.4% F3'5'H/CYP75A 20 0.4% TAT 20 0.4% 7DLH 19 0.38% DFR 19 0.38% CHS 16 0.32% CYP51G1 15 0.3% TYDC_DDC 14 0.28% CCoAOMT 14 0.28% F5H/CYP84A 14 0.28% CPR 11 0.22% GGPPS 11 0.22% FPPS 11 0.22% MPO 10 0.2% SMO1/SMO2 10 0.2% CPD/CYP90A1 10 0.2% CNMT 9 0.18% SQS/FDFT1 9 0.18% HMGR 9 0.18% ODC 8 0.16% CYP80B1 8 0.16% ANS/LDOX 8 0.16% DXS 8 0.16% MVK 8 0.16% AACT 8 0.16% ADC 7 0.14% ROT3/CYP90C1 7 0.14% MCT/IspD 7 0.14% CYP719 6 0.12% TDC 6 0.12% HPPR 6 0.12% DWF1 6 0.12% HMGS 6 0.12% LAMT 5 0.1% ISY 5 0.1% SQE 5 0.1% MVD 5 0.1% IDI 5 0.1% DET2 4 0.08% 6OMT_4OMT_SOMT 3 0.06% CHI 3 0.06% HYD1 3 0.06% DWF7 3 0.06% HDS/IspG 3 0.06% HDR/IspH 3 0.06% MDS/IspF 3 0.06% DXR 3 0.06% DWF5 2 0.04% PMK 2 0.04% CMK/IspE 2 0.04% XMT_MXMT_DXMT 1 0.02% FLS 1 0.02% CPI1 1 0.02% FK 1 0.02%

Species Pathway Results

The links below show identification results for this species within each pathway, instead of opening the global pathway overview.

Pathway	Candidate Genes	Families	Top family	Results
Terpenoid pathway	621	20	BAHD (247)	View species results
Phenylpropanoid pathway	530	12	POD (270)	View species results
Alkaloid pathway	443	24	7DLGT (85)	View species results
Flavonoid pathway	283	12	UFGT (173)	View species results
Rosmarinic acid pathway	196	7	C4H (82)	View species results
Steroid pathway	120	13	SMT1/SMT2/SMT3 (51)	View species results

Broad Catalytic Groups

P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.

Catalytic group	Families	Candidate genes	Included families
P450/oxygenase	23	1655	7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase	3	469	BAHD, HCT, RAS

Identification Result List

Search the public identification results for this species; click pathway or family legends above to narrow within this species.

Current family filter: BAHD

Gene	Pathway	Family	Confidence	Status	Best Target
BOampscaffold130069450	Terpenoid	BAHD	medium	pass	BAHD__00039__sp_Q3ZPN4_ACMAT_VITLA
BOampscaffold13470072620	Terpenoid	BAHD	low	borderline	BAHD__00055__sp_Q8H780_SCP13_ARATH
BOampscaffold1360073800	Terpenoid	BAHD	medium	pass	BAHD__00026__sp_O64811_SCP9_ARATH
BOampscaffold13830075550	Terpenoid	BAHD	low	borderline	BAHD__00025__sp_O64810_SCP10_ARATH
BOampscaffold13910076040	Terpenoid	BAHD	medium	pass	BAHD__00090__sp_Q9SHJ5_GPAT1_ARATH
BOampscaffold14160081290	Terpenoid	BAHD	low	borderline	BAHD__00026__sp_O64811_SCP9_ARATH
BOampscaffold14160081300	Terpenoid	BAHD	medium	pass	BAHD__00083__sp_Q9LMM0_GPAT4_ARATH
BOampscaffold14440084390	Terpenoid	BAHD	medium	pass	BAHD__00040__sp_Q41745_LPAT_MAIZE
BOampscaffold14490085040	Terpenoid	BAHD	medium	pass	BAHD__00039__sp_Q3ZPN4_ACMAT_VITLA
BOampscaffold14490085050	Terpenoid	BAHD	medium	pass	BAHD__00016__sp_D4NUX0_HCT1_ACTRA
BOampscaffold1460086830	Terpenoid	BAHD	medium	pass	BAHD__00085__sp_Q9M1K5_ZDH13_ARATH
BOampscaffold1500092040	Terpenoid	BAHD	medium	pass	BAHD__00040__sp_Q41745_LPAT_MAIZE
BOampscaffold1510093430	Terpenoid	BAHD	medium	pass	BAHD__00090__sp_Q9SHJ5_GPAT1_ARATH
BOampscaffold16090106820	Terpenoid	BAHD	medium	pass	BAHD__00052__sp_Q8GWG0_GPAT9_ARATH
BOampscaffold1610107510	Terpenoid	BAHD	medium	pass	BAHD__00016__sp_D4NUX0_HCT1_ACTRA
BOampscaffold1610108140	Terpenoid	BAHD	medium	pass	BAHD__00055__sp_Q8H780_SCP13_ARATH
BOampscaffold1610109250	Terpenoid	BAHD	low	borderline	BAHD__00051__sp_Q7XA86_ZDH11_ARATH
BOampscaffold1610112000	Terpenoid	BAHD	medium	pass	BAHD__00041__sp_Q4VCM1_LCAT2_ARATH
BOampscaffold1660117520	Terpenoid	BAHD	medium	pass	BAHD__00082__sp_Q9LLY4_LPAT1_BRANA
BOampscaffold1660117790	Terpenoid	BAHD	medium	pass	BAHD__00039__sp_Q3ZPN4_ACMAT_VITLA
BOampscaffold16990122250	Terpenoid	BAHD	medium	pass	BAHD__00081__sp_Q9LJB4_5MAT_ARATH
BOampscaffold16990122260	Terpenoid	BAHD	medium	pass	BAHD__00081__sp_Q9LJB4_5MAT_ARATH
BOampscaffold17140123240	Terpenoid	BAHD	medium	pass	BAHD__00026__sp_O64811_SCP9_ARATH
BOampscaffold17140123680	Terpenoid	BAHD	medium	pass	BAHD__00074__sp_Q9FFQ7_FACT_ARATH
BOampscaffold17270127980	Terpenoid	BAHD	medium	pass	BAHD__00027__sp_O80437_GPAT6_ARATH
BOampscaffold17270127990	Terpenoid	BAHD	low	borderline	BAHD__00026__sp_O64811_SCP9_ARATH
BOampscaffold17610132490	Terpenoid	BAHD	low	borderline	BAHD__00089__sp_Q9SB58_ZDH19_ARATH
BOampscaffold17630132770	Terpenoid	BAHD	medium	pass	BAHD__00008__sp_A0A2Z5CVQ4_AT1_CROXC
BOampscaffold17720133150	Terpenoid	BAHD	medium	pass	BAHD__00055__sp_Q8H780_SCP13_ARATH
BOampscaffold17720133290	Terpenoid	BAHD	medium	pass	BAHD__00006__sp_A0A2R6Q326_AT16_ACTCC
BOampscaffold1790135290	Terpenoid	BAHD	low	borderline	BAHD__00026__sp_O64811_SCP9_ARATH
BOampscaffold1790135950	Terpenoid	BAHD	medium	pass	BAHD__00036__sp_Q10L01_ZDHC9_ORYSJ
BOampscaffold1820138470	Terpenoid	BAHD	medium	pass	BAHD__00090__sp_Q9SHJ5_GPAT1_ARATH
BOampscaffold18220138810	Terpenoid	BAHD	low	borderline	BAHD__00005__sp_A0A161IUT7_DGAT1_CORAE
BOampscaffold18400140250	Terpenoid	BAHD	low	borderline	BAHD__00055__sp_Q8H780_SCP13_ARATH
BOampscaffold1910142890	Terpenoid	BAHD	medium	pass	BAHD__00039__sp_Q3ZPN4_ACMAT_VITLA
BOampscaffold19180143480	Terpenoid	BAHD	low	borderline	BAHD__00055__sp_Q8H780_SCP13_ARATH
BOampscaffold19470145410	Terpenoid	BAHD	medium	pass	BAHD__00025__sp_O64810_SCP10_ARATH
BOampscaffold1980147560	Terpenoid	BAHD	medium	pass	BAHD__00068__sp_Q9C533_ZDHC1_ARATH
BOampscaffold1980153410	Terpenoid	BAHD	low	borderline	BAHD__00025__sp_O64810_SCP10_ARATH
BOampscaffold1980153660	Terpenoid	BAHD	low	borderline	BAHD__00026__sp_O64811_SCP9_ARATH
BOampscaffold1980154500	Terpenoid	BAHD	low	borderline	BAHD__00088__sp_Q9M7Z1_ODB2_ARATH
BOampscaffold20000155890	Terpenoid	BAHD	medium	pass	BAHD__00084__sp_Q9M115_ZDH16_ARATH
BOampscaffold2000155730	Terpenoid	BAHD	medium	pass	BAHD__00022__sp_K7PEY4_RAM2_MEDTR
BOampscaffold2030157260	Terpenoid	BAHD	medium	pass	BAHD__00007__sp_A0A2Z5CVK5_AT2_CROXC
BOampscaffold2030157400	Terpenoid	BAHD	medium	pass	BAHD__00026__sp_O64811_SCP9_ARATH
BOampscaffold2030157410	Terpenoid	BAHD	medium	pass	BAHD__00025__sp_O64810_SCP10_ARATH
BOampscaffold2040159450	Terpenoid	BAHD	low	borderline	BAHD__00055__sp_Q8H780_SCP13_ARATH
BOampscaffold2040159540	Terpenoid	BAHD	low	borderline	BAHD__00088__sp_Q9M7Z1_ODB2_ARATH
BOampscaffold20450160570	Terpenoid	BAHD	medium	pass	BAHD__00047__sp_Q5KS41_WSD11_ARATH