Bonia amplexicaulis (bonia_amplexicaulis)
Imported from atlas release summary for Bonia amplexicaulis.
2193
Candidate Genes
104
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
6
Pathways
Family Distribution
2193
Candidate Genes
BAHD
6.9%
POD
6.05%
C3'H/CYP98A
5.34%
C4H
5.14%
UGT
4.4%
4CL
4.11%
7DLGT
3.83%
UFGT
3.65%
Other Families
60.57%
More Families (96)
IFS
157
3.17%
T3O
147
2.96%
CYP76
146
2.94%
F3H
131
2.64%
DWF4/CYP90B1
120
2.42%
NMT
115
2.32%
F3'H/CYP75B
105
2.12%
STR
98
1.98%
BR6OX2/CYP85A2
89
1.8%
SMT1/SMT2/SMT3
85
1.71%
CYP71
74
1.49%
CODM/T6ODM
70
1.41%
RAS
68
1.37%
PMT
65
1.31%
PYKS
61
1.23%
H6H
61
1.23%
CAD
59
1.19%
LAC
59
1.19%
HCT
59
1.19%
CSE
57
1.15%
TRI/TRII
51
1.03%
TPS
50
1.01%
CAS
47
0.95%
SLS
46
0.93%
G8O/G8H
42
0.85%
PAL
42
0.85%
IFR
40
0.81%
CCR
37
0.75%
GS
36
0.73%
COMT
36
0.73%
T16H
35
0.71%
SGD
33
0.67%
GES
33
0.67%
ANR
33
0.67%
16OMT
29
0.58%
CYP90D1
27
0.54%
IO
25
0.5%
NCS
25
0.5%
8HGO
23
0.46%
BR6OX1/CYP85A1
23
0.46%
FNS
21
0.42%
COR
20
0.4%
BBE
20
0.4%
F3'5'H/CYP75A
20
0.4%
TAT
20
0.4%
7DLH
19
0.38%
DFR
19
0.38%
CHS
16
0.32%
CYP51G1
15
0.3%
TYDC_DDC
14
0.28%
CCoAOMT
14
0.28%
F5H/CYP84A
14
0.28%
CPR
11
0.22%
GGPPS
11
0.22%
FPPS
11
0.22%
MPO
10
0.2%
SMO1/SMO2
10
0.2%
CPD/CYP90A1
10
0.2%
CNMT
9
0.18%
SQS/FDFT1
9
0.18%
HMGR
9
0.18%
ODC
8
0.16%
CYP80B1
8
0.16%
ANS/LDOX
8
0.16%
DXS
8
0.16%
MVK
8
0.16%
AACT
8
0.16%
ADC
7
0.14%
ROT3/CYP90C1
7
0.14%
MCT/IspD
7
0.14%
CYP719
6
0.12%
TDC
6
0.12%
HPPR
6
0.12%
DWF1
6
0.12%
HMGS
6
0.12%
LAMT
5
0.1%
ISY
5
0.1%
SQE
5
0.1%
MVD
5
0.1%
IDI
5
0.1%
DET2
4
0.08%
6OMT_4OMT_SOMT
3
0.06%
CHI
3
0.06%
HYD1
3
0.06%
DWF7
3
0.06%
HDS/IspG
3
0.06%
HDR/IspH
3
0.06%
MDS/IspF
3
0.06%
DXR
3
0.06%
DWF5
2
0.04%
PMK
2
0.04%
CMK/IspE
2
0.04%
XMT_MXMT_DXMT
1
0.02%
FLS
1
0.02%
CPI1
1
0.02%
FK
1
0.02%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Candidate Genes | Families | Top family | Results |
|---|---|---|---|---|
| Terpenoid pathway | 621 | 20 | BAHD (247) | View species results |
| Phenylpropanoid pathway | 530 | 12 | POD (270) | View species results |
| Alkaloid pathway | 443 | 24 | 7DLGT (85) | View species results |
| Flavonoid pathway | 283 | 12 | UFGT (173) | View species results |
| Rosmarinic acid pathway | 196 | 7 | C4H (82) | View species results |
| Steroid pathway | 120 | 13 | SMT1/SMT2/SMT3 (51) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Families | Candidate genes | Included families |
|---|---|---|---|
| P450/oxygenase | 23 | 1655 | 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 3 | 469 | BAHD, HCT, RAS |
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: LAC
| Gene | Pathway | Family | Confidence | Status | Best Target |
|---|---|---|---|---|---|
| BOampC109771410009700 | Phenylpropanoid | LAC | medium | pass | LAC__00001__sp_O80434_LAC4_ARATH |
| BOampscaffold11700051080 | Phenylpropanoid | LAC | low | borderline | LAC__00001__sp_O80434_LAC4_ARATH |
| BOampscaffold12170057740 | Phenylpropanoid | LAC | low | borderline | LAC__00004__sp_Q9LFD2_LAC8_ARATH |
| BOampscaffold1220058410 | Phenylpropanoid | LAC | medium | pass | LAC__00002__sp_O81081_LAC2_ARATH |
| BOampscaffold13490072810 | Phenylpropanoid | LAC | low | borderline | LAC__00001__sp_O80434_LAC4_ARATH |
| BOampscaffold1500092150 | Phenylpropanoid | LAC | medium | pass | LAC__00004__sp_Q9LFD2_LAC8_ARATH |
| BOampscaffold1500092160 | Phenylpropanoid | LAC | medium | pass | LAC__00004__sp_Q9LFD2_LAC8_ARATH |
| BOampscaffold1500092170 | Phenylpropanoid | LAC | medium | pass | LAC__00004__sp_Q9LFD2_LAC8_ARATH |
| BOampscaffold1510094200 | Phenylpropanoid | LAC | medium | pass | LAC__00004__sp_Q9LFD2_LAC8_ARATH |
| BOampscaffold1540096550 | Phenylpropanoid | LAC | medium | pass | LAC__00004__sp_Q9LFD2_LAC8_ARATH |
| BOampscaffold1540096570 | Phenylpropanoid | LAC | medium | pass | LAC__00004__sp_Q9LFD2_LAC8_ARATH |
| BOampscaffold15940099870 | Phenylpropanoid | LAC | medium | pass | LAC__00001__sp_O80434_LAC4_ARATH |
| BOampscaffold16140112430 | Phenylpropanoid | LAC | low | borderline | LAC__00004__sp_Q9LFD2_LAC8_ARATH |
| BOampscaffold17140123110 | Phenylpropanoid | LAC | medium | pass | LAC__00004__sp_Q9LFD2_LAC8_ARATH |
| BOampscaffold18120138030 | Phenylpropanoid | LAC | medium | pass | LAC__00002__sp_O81081_LAC2_ARATH |
| BOampscaffold18120138060 | Phenylpropanoid | LAC | low | borderline | LAC__00002__sp_O81081_LAC2_ARATH |
| BOampscaffold18220138880 | Phenylpropanoid | LAC | medium | pass | LAC__00001__sp_O80434_LAC4_ARATH |
| BOampscaffold1980149810 | Phenylpropanoid | LAC | medium | pass | LAC__00002__sp_O81081_LAC2_ARATH |
| BOampscaffold20000155900 | Phenylpropanoid | LAC | medium | pass | LAC__00004__sp_Q9LFD2_LAC8_ARATH |
| BOampscaffold20000155910 | Phenylpropanoid | LAC | medium | pass | LAC__00004__sp_Q9LFD2_LAC8_ARATH |
| BOampscaffold2090165880 | Phenylpropanoid | LAC | medium | pass | LAC__00002__sp_O81081_LAC2_ARATH |
| BOampscaffold2090166930 | Phenylpropanoid | LAC | medium | pass | LAC__00001__sp_O80434_LAC4_ARATH |
| BOampscaffold2190177270 | Phenylpropanoid | LAC | medium | pass | LAC__00004__sp_Q9LFD2_LAC8_ARATH |
| BOampscaffold21950177830 | Phenylpropanoid | LAC | low | borderline | LAC__00001__sp_O80434_LAC4_ARATH |
| BOampscaffold2230179460 | Phenylpropanoid | LAC | low | borderline | LAC__00004__sp_Q9LFD2_LAC8_ARATH |
| BOampscaffold23040189770 | Phenylpropanoid | LAC | low | borderline | LAC__00003__sp_Q84J37_LAC15_ARATH |
| BOampscaffold23270190250 | Phenylpropanoid | LAC | low | borderline | LAC__00004__sp_Q9LFD2_LAC8_ARATH |
| BOampscaffold23270190670 | Phenylpropanoid | LAC | medium | pass | LAC__00004__sp_Q9LFD2_LAC8_ARATH |
| BOampscaffold2440198680 | Phenylpropanoid | LAC | medium | pass | LAC__00001__sp_O80434_LAC4_ARATH |
| BOampscaffold2670213490 | Phenylpropanoid | LAC | medium | pass | LAC__00001__sp_O80434_LAC4_ARATH |
| BOampscaffold27730217870 | Phenylpropanoid | LAC | low | borderline | LAC__00001__sp_O80434_LAC4_ARATH |
| BOampscaffold30290242590 | Phenylpropanoid | LAC | medium | pass | LAC__00002__sp_O81081_LAC2_ARATH |
| BOampscaffold3160256140 | Phenylpropanoid | LAC | medium | pass | LAC__00004__sp_Q9LFD2_LAC8_ARATH |
| BOampscaffold3160256170 | Phenylpropanoid | LAC | medium | pass | LAC__00001__sp_O80434_LAC4_ARATH |
| BOampscaffold3230260390 | Phenylpropanoid | LAC | low | borderline | LAC__00001__sp_O80434_LAC4_ARATH |
| BOampscaffold3230261150 | Phenylpropanoid | LAC | medium | pass | LAC__00002__sp_O81081_LAC2_ARATH |
| BOampscaffold350272100 | Phenylpropanoid | LAC | low | borderline | LAC__00004__sp_Q9LFD2_LAC8_ARATH |
| BOampscaffold3980301710 | Phenylpropanoid | LAC | medium | pass | LAC__00004__sp_Q9LFD2_LAC8_ARATH |
| BOampscaffold3980301720 | Phenylpropanoid | LAC | medium | pass | LAC__00004__sp_Q9LFD2_LAC8_ARATH |
| BOampscaffold3980301730 | Phenylpropanoid | LAC | medium | pass | LAC__00004__sp_Q9LFD2_LAC8_ARATH |
| BOampscaffold3980302000 | Phenylpropanoid | LAC | medium | pass | LAC__00002__sp_O81081_LAC2_ARATH |
| BOampscaffold3980302030 | Phenylpropanoid | LAC | medium | pass | LAC__00002__sp_O81081_LAC2_ARATH |
| BOampscaffold3980302040 | Phenylpropanoid | LAC | medium | pass | LAC__00002__sp_O81081_LAC2_ARATH |
| BOampscaffold3980302790 | Phenylpropanoid | LAC | medium | pass | LAC__00001__sp_O80434_LAC4_ARATH |
| BOampscaffold460329970 | Phenylpropanoid | LAC | medium | pass | LAC__00001__sp_O80434_LAC4_ARATH |
| BOampscaffold460335930 | Phenylpropanoid | LAC | medium | pass | LAC__00002__sp_O81081_LAC2_ARATH |
| BOampscaffold460336590 | Phenylpropanoid | LAC | medium | pass | LAC__00002__sp_O81081_LAC2_ARATH |
| BOampscaffold460336620 | Phenylpropanoid | LAC | medium | pass | LAC__00002__sp_O81081_LAC2_ARATH |
| BOampscaffold460336880 | Phenylpropanoid | LAC | medium | pass | LAC__00004__sp_Q9LFD2_LAC8_ARATH |
| BOampscaffold460336890 | Phenylpropanoid | LAC | medium | pass | LAC__00001__sp_O80434_LAC4_ARATH |