PlantSME Plant secondary metabolism enzyme database

Bonia amplexicaulis (bonia_amplexicaulis)

Imported from atlas release summary for Bonia amplexicaulis.

2193
Candidate Genes
104
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Site group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Current group 117
Eudicots
Site group 495
Species Metadata
Taxon group
Monocots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
Terpenoid pathway 28.32% Phenylpropanoid pathway 24.17% Alkaloid pathway 20.2% Flavonoid pathway 12.9% Rosmarinic acid pathway 8.94% Steroid pathway 5.47%
Family Distribution
BAHD 6.9% POD 6.05% C3'H/CYP98A 5.34% C4H 5.14% UGT 4.4% 4CL 4.11% 7DLGT 3.83% UFGT 3.65%
Other Families 60.57%
More Families (96)
IFS 157 3.17% T3O 147 2.96% CYP76 146 2.94% F3H 131 2.64% DWF4/CYP90B1 120 2.42% NMT 115 2.32% F3'H/CYP75B 105 2.12% STR 98 1.98% BR6OX2/CYP85A2 89 1.8% SMT1/SMT2/SMT3 85 1.71% CYP71 74 1.49% CODM/T6ODM 70 1.41% RAS 68 1.37% PMT 65 1.31% PYKS 61 1.23% H6H 61 1.23% CAD 59 1.19% LAC 59 1.19% HCT 59 1.19% CSE 57 1.15% TRI/TRII 51 1.03% TPS 50 1.01% CAS 47 0.95% SLS 46 0.93% G8O/G8H 42 0.85% PAL 42 0.85% IFR 40 0.81% CCR 37 0.75% GS 36 0.73% COMT 36 0.73% T16H 35 0.71% SGD 33 0.67% GES 33 0.67% ANR 33 0.67% 16OMT 29 0.58% CYP90D1 27 0.54% IO 25 0.5% NCS 25 0.5% 8HGO 23 0.46% BR6OX1/CYP85A1 23 0.46% FNS 21 0.42% COR 20 0.4% BBE 20 0.4% F3'5'H/CYP75A 20 0.4% TAT 20 0.4% 7DLH 19 0.38% DFR 19 0.38% CHS 16 0.32% CYP51G1 15 0.3% TYDC_DDC 14 0.28% CCoAOMT 14 0.28% F5H/CYP84A 14 0.28% CPR 11 0.22% GGPPS 11 0.22% FPPS 11 0.22% MPO 10 0.2% SMO1/SMO2 10 0.2% CPD/CYP90A1 10 0.2% CNMT 9 0.18% SQS/FDFT1 9 0.18% HMGR 9 0.18% ODC 8 0.16% CYP80B1 8 0.16% ANS/LDOX 8 0.16% DXS 8 0.16% MVK 8 0.16% AACT 8 0.16% ADC 7 0.14% ROT3/CYP90C1 7 0.14% MCT/IspD 7 0.14% CYP719 6 0.12% TDC 6 0.12% HPPR 6 0.12% DWF1 6 0.12% HMGS 6 0.12% LAMT 5 0.1% ISY 5 0.1% SQE 5 0.1% MVD 5 0.1% IDI 5 0.1% DET2 4 0.08% 6OMT_4OMT_SOMT 3 0.06% CHI 3 0.06% HYD1 3 0.06% DWF7 3 0.06% HDS/IspG 3 0.06% HDR/IspH 3 0.06% MDS/IspF 3 0.06% DXR 3 0.06% DWF5 2 0.04% PMK 2 0.04% CMK/IspE 2 0.04% XMT_MXMT_DXMT 1 0.02% FLS 1 0.02% CPI1 1 0.02% FK 1 0.02%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 621 20 BAHD (247) View species results
Phenylpropanoid pathway 530 12 POD (270) View species results
Alkaloid pathway 443 24 7DLGT (85) View species results
Flavonoid pathway 283 12 UFGT (173) View species results
Rosmarinic acid pathway 196 7 C4H (82) View species results
Steroid pathway 120 13 SMT1/SMT2/SMT3 (51) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 23 1655 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 469 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: DFR
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Gene Pathway Family Confidence Status
BOampscaffold11120043200 Flavonoid DFR medium pass
BOampscaffold12320060890 Flavonoid DFR low borderline
BOampscaffold14490085030 Flavonoid DFR low borderline
BOampscaffold17790133620 Flavonoid DFR medium borderline
BOampscaffold18370139840 Flavonoid DFR low borderline
BOampscaffold1910143210 Flavonoid DFR medium borderline
BOampscaffold19960155390 Flavonoid DFR low borderline
BOampscaffold19980155540 Flavonoid DFR medium borderline
BOampscaffold2640212770 Flavonoid DFR medium borderline
BOampscaffold2850227130 Flavonoid DFR medium borderline
BOampscaffold2890230070 Flavonoid DFR medium pass
BOampscaffold3680285470 Flavonoid DFR medium borderline
BOampscaffold3750291900 Flavonoid DFR low borderline
BOampscaffold450324630 Flavonoid DFR medium borderline
BOampscaffold6480391960 Flavonoid DFR medium borderline
BOampscaffold6480392060 Flavonoid DFR medium borderline
BOampscaffold7430405390 Flavonoid DFR medium borderline
BOampscaffold74600407240 Flavonoid DFR medium borderline
BOampscaffold8710435780 Flavonoid DFR low borderline