Bonia amplexicaulis (bonia_amplexicaulis)

This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.

Pathway Coverage

6 Pathways

Terpenoid pathway 28.32% Phenylpropanoid pathway 24.17% Alkaloid pathway 20.2% Flavonoid pathway 12.9% Rosmarinic acid pathway 8.94% Steroid pathway 5.47%

Family Distribution

2193 Candidate Genes

BAHD 6.9% POD 6.05% C3'H/CYP98A 5.34% C4H 5.14% UGT 4.4% 4CL 4.11% 7DLGT 3.83% UFGT 3.65%

Other Families 60.57%

More Families (96)

IFS 157 3.17% T3O 147 2.96% CYP76 146 2.94% F3H 131 2.64% DWF4/CYP90B1 120 2.42% NMT 115 2.32% F3'H/CYP75B 105 2.12% STR 98 1.98% BR6OX2/CYP85A2 89 1.8% SMT1/SMT2/SMT3 85 1.71% CYP71 74 1.49% CODM/T6ODM 70 1.41% RAS 68 1.37% PMT 65 1.31% PYKS 61 1.23% H6H 61 1.23% CAD 59 1.19% LAC 59 1.19% HCT 59 1.19% CSE 57 1.15% TRI/TRII 51 1.03% TPS 50 1.01% CAS 47 0.95% SLS 46 0.93% G8O/G8H 42 0.85% PAL 42 0.85% IFR 40 0.81% CCR 37 0.75% GS 36 0.73% COMT 36 0.73% T16H 35 0.71% SGD 33 0.67% GES 33 0.67% ANR 33 0.67% 16OMT 29 0.58% CYP90D1 27 0.54% IO 25 0.5% NCS 25 0.5% 8HGO 23 0.46% BR6OX1/CYP85A1 23 0.46% FNS 21 0.42% COR 20 0.4% BBE 20 0.4% F3'5'H/CYP75A 20 0.4% TAT 20 0.4% 7DLH 19 0.38% DFR 19 0.38% CHS 16 0.32% CYP51G1 15 0.3% TYDC_DDC 14 0.28% CCoAOMT 14 0.28% F5H/CYP84A 14 0.28% CPR 11 0.22% GGPPS 11 0.22% FPPS 11 0.22% MPO 10 0.2% SMO1/SMO2 10 0.2% CPD/CYP90A1 10 0.2% CNMT 9 0.18% SQS/FDFT1 9 0.18% HMGR 9 0.18% ODC 8 0.16% CYP80B1 8 0.16% ANS/LDOX 8 0.16% DXS 8 0.16% MVK 8 0.16% AACT 8 0.16% ADC 7 0.14% ROT3/CYP90C1 7 0.14% MCT/IspD 7 0.14% CYP719 6 0.12% TDC 6 0.12% HPPR 6 0.12% DWF1 6 0.12% HMGS 6 0.12% LAMT 5 0.1% ISY 5 0.1% SQE 5 0.1% MVD 5 0.1% IDI 5 0.1% DET2 4 0.08% 6OMT_4OMT_SOMT 3 0.06% CHI 3 0.06% HYD1 3 0.06% DWF7 3 0.06% HDS/IspG 3 0.06% HDR/IspH 3 0.06% MDS/IspF 3 0.06% DXR 3 0.06% DWF5 2 0.04% PMK 2 0.04% CMK/IspE 2 0.04% XMT_MXMT_DXMT 1 0.02% FLS 1 0.02% CPI1 1 0.02% FK 1 0.02%

Species Pathway Results

The links below show identification results for this species within each pathway, instead of opening the global pathway overview.

Pathway	Candidate Genes	Families	Top family	Results
Terpenoid pathway	621	20	BAHD (247)	View species results
Phenylpropanoid pathway	530	12	POD (270)	View species results
Alkaloid pathway	443	24	7DLGT (85)	View species results
Flavonoid pathway	283	12	UFGT (173)	View species results
Rosmarinic acid pathway	196	7	C4H (82)	View species results
Steroid pathway	120	13	SMT1/SMT2/SMT3 (51)	View species results

Broad Catalytic Groups

P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.

Catalytic group	Families	Candidate genes	Included families
P450/oxygenase	23	1655	7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase	3	469	BAHD, HCT, RAS

Identification Result List

Search the public identification results for this species; click pathway or family legends above to narrow within this species.

Current family filter: CYP76

Gene	Pathway	Family	Confidence	Status	Best Target
BOampC107200990001540	Terpenoid	CYP76	medium	borderline	CYP76__00012__sp_A0AA51VJB7_C7694_LOPWI
BOampC107643770002190	Terpenoid	CYP76	medium	borderline	CYP76__00010__sp_A0A2K9RG08_CYBK1_VITAC
BOampC109207330007260	Terpenoid	CYP76	medium	pass	CYP76__00019__sp_Q6YTF1_C76M8_ORYSJ
BOampscaffold100016370	Terpenoid	CYP76	low	borderline	CYP76__00023__sp_S4UX02_CYPH1_SALMI
BOampscaffold10013080	Terpenoid	CYP76	low	borderline	CYP76__00025__sp_W8JIS5_IO_CATRO
BOampscaffold10060023570	Terpenoid	CYP76	medium	pass	CYP76__00004__sp_A0A0Y0GRS3_C76H3_SALMI
BOampscaffold1020025300	Terpenoid	CYP76	medium	borderline	CYP76__00021__sp_Q6Z5I7_C76M6_ORYSJ
BOampscaffold1020025310	Terpenoid	CYP76	medium	borderline	CYP76__00009__sp_A0A1Z3GBS4_CYPH3_ISORU
BOampscaffold1020025320	Terpenoid	CYP76	medium	borderline	CYP76__00009__sp_A0A1Z3GBS4_CYPH3_ISORU
BOampscaffold1020026600	Terpenoid	CYP76	low	borderline	CYP76__00011__sp_A0A3Q9R4N5_C76B7_ARNEU
BOampscaffold10350029400	Terpenoid	CYP76	medium	borderline	CYP76__00022__sp_Q8VWZ7_C76B6_CATRO
BOampscaffold11000042370	Terpenoid	CYP76	low	borderline	CYP76__00022__sp_Q8VWZ7_C76B6_CATRO
BOampscaffold1130045340	Terpenoid	CYP76	medium	pass	CYP76__00009__sp_A0A1Z3GBS4_CYPH3_ISORU
BOampscaffold1130047990	Terpenoid	CYP76	low	borderline	CYP76__00016__sp_P0DXJ6_C7631_LOPWI
BOampscaffold1130048110	Terpenoid	CYP76	low	borderline	CYP76__00018__sp_Q69X58_C76M7_ORYSJ
BOampscaffold12030053060	Terpenoid	CYP76	low	borderline	CYP76__00011__sp_A0A3Q9R4N5_C76B7_ARNEU
BOampscaffold1210053960	Terpenoid	CYP76	medium	pass	CYP76__00017__sp_Q14T82_C76B9_PETHY
BOampscaffold12270060580	Terpenoid	CYP76	medium	borderline	CYP76__00018__sp_Q69X58_C76M7_ORYSJ
BOampscaffold12510061960	Terpenoid	CYP76	medium	borderline	CYP76__00022__sp_Q8VWZ7_C76B6_CATRO
BOampscaffold12790065050	Terpenoid	CYP76	low	borderline	CYP76__00025__sp_W8JIS5_IO_CATRO
BOampscaffold12960068240	Terpenoid	CYP76	medium	pass	CYP76__00017__sp_Q14T82_C76B9_PETHY
BOampscaffold130068710	Terpenoid	CYP76	low	borderline	CYP76__00022__sp_Q8VWZ7_C76B6_CATRO
BOampscaffold13060070250	Terpenoid	CYP76	low	borderline	CYP76__00012__sp_A0AA51VJB7_C7694_LOPWI
BOampscaffold13060070260	Terpenoid	CYP76	low	borderline	CYP76__00012__sp_A0AA51VJB7_C7694_LOPWI
BOampscaffold1340072040	Terpenoid	CYP76	low	borderline	CYP76__00011__sp_A0A3Q9R4N5_C76B7_ARNEU
BOampscaffold140079570	Terpenoid	CYP76	low	borderline	CYP76__00012__sp_A0AA51VJB7_C7694_LOPWI
BOampscaffold14160081170	Terpenoid	CYP76	low	borderline	CYP76__00022__sp_Q8VWZ7_C76B6_CATRO
BOampscaffold14320083810	Terpenoid	CYP76	low	borderline	CYP76__00018__sp_Q69X58_C76M7_ORYSJ
BOampscaffold14340083930	Terpenoid	CYP76	medium	pass	CYP76__00010__sp_A0A2K9RG08_CYBK1_VITAC
BOampscaffold1480089130	Terpenoid	CYP76	medium	pass	CYP76__00011__sp_A0A3Q9R4N5_C76B7_ARNEU
BOampscaffold1480089170	Terpenoid	CYP76	low	borderline	CYP76__00011__sp_A0A3Q9R4N5_C76B7_ARNEU
BOampscaffold1540096610	Terpenoid	CYP76	medium	borderline	CYP76__00022__sp_Q8VWZ7_C76B6_CATRO
BOampscaffold1560097280	Terpenoid	CYP76	low	borderline	CYP76__00023__sp_S4UX02_CYPH1_SALMI
BOampscaffold1560097300	Terpenoid	CYP76	medium	pass	CYP76__00012__sp_A0AA51VJB7_C7694_LOPWI
BOampscaffold160103740	Terpenoid	CYP76	low	borderline	CYP76__00025__sp_W8JIS5_IO_CATRO
BOampscaffold1610107150	Terpenoid	CYP76	low	borderline	CYP76__00009__sp_A0A1Z3GBS4_CYPH3_ISORU
BOampscaffold16190112810	Terpenoid	CYP76	medium	pass	CYP76__00022__sp_Q8VWZ7_C76B6_CATRO
BOampscaffold16190112820	Terpenoid	CYP76	medium	pass	CYP76__00025__sp_W8JIS5_IO_CATRO
BOampscaffold16480114820	Terpenoid	CYP76	low	borderline	CYP76__00013__sp_D1MI46_C76BA_SWEMU
BOampscaffold1650115010	Terpenoid	CYP76	medium	pass	CYP76__00019__sp_Q6YTF1_C76M8_ORYSJ
BOampscaffold1660118010	Terpenoid	CYP76	medium	borderline	CYP76__00022__sp_Q8VWZ7_C76B6_CATRO
BOampscaffold17140123880	Terpenoid	CYP76	medium	pass	CYP76__00022__sp_Q8VWZ7_C76B6_CATRO
BOampscaffold17140123920	Terpenoid	CYP76	medium	borderline	CYP76__00013__sp_D1MI46_C76BA_SWEMU
BOampscaffold1720126030	Terpenoid	CYP76	low	borderline	CYP76__00014__sp_I3PFJ5_C76AD_BETVU
BOampscaffold1720126040	Terpenoid	CYP76	low	borderline	CYP76__00014__sp_I3PFJ5_C76AD_BETVU
BOampscaffold1750130360	Terpenoid	CYP76	medium	pass	CYP76__00020__sp_Q6YTF5_C76M5_ORYSJ
BOampscaffold17610132410	Terpenoid	CYP76	medium	borderline	CYP76__00012__sp_A0AA51VJB7_C7694_LOPWI
BOampscaffold1790135850	Terpenoid	CYP76	medium	borderline	CYP76__00013__sp_D1MI46_C76BA_SWEMU
BOampscaffold1880141540	Terpenoid	CYP76	medium	borderline	CYP76__00019__sp_Q6YTF1_C76M8_ORYSJ
BOampscaffold1910142880	Terpenoid	CYP76	medium	pass	CYP76__00012__sp_A0AA51VJB7_C7694_LOPWI