Bonia amplexicaulis (bonia_amplexicaulis)

This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.

Pathway Coverage

6 Pathways

Terpenoid pathway 28.32% Phenylpropanoid pathway 24.17% Alkaloid pathway 20.2% Flavonoid pathway 12.9% Rosmarinic acid pathway 8.94% Steroid pathway 5.47%

Family Distribution

2193 Candidate Genes

BAHD 6.9% POD 6.05% C3'H/CYP98A 5.34% C4H 5.14% UGT 4.4% 4CL 4.11% 7DLGT 3.83% UFGT 3.65%

Other Families 60.57%

More Families (96)

IFS 157 3.17% T3O 147 2.96% CYP76 146 2.94% F3H 131 2.64% DWF4/CYP90B1 120 2.42% NMT 115 2.32% F3'H/CYP75B 105 2.12% STR 98 1.98% BR6OX2/CYP85A2 89 1.8% SMT1/SMT2/SMT3 85 1.71% CYP71 74 1.49% CODM/T6ODM 70 1.41% RAS 68 1.37% PMT 65 1.31% PYKS 61 1.23% H6H 61 1.23% CAD 59 1.19% LAC 59 1.19% HCT 59 1.19% CSE 57 1.15% TRI/TRII 51 1.03% TPS 50 1.01% CAS 47 0.95% SLS 46 0.93% G8O/G8H 42 0.85% PAL 42 0.85% IFR 40 0.81% CCR 37 0.75% GS 36 0.73% COMT 36 0.73% T16H 35 0.71% SGD 33 0.67% GES 33 0.67% ANR 33 0.67% 16OMT 29 0.58% CYP90D1 27 0.54% IO 25 0.5% NCS 25 0.5% 8HGO 23 0.46% BR6OX1/CYP85A1 23 0.46% FNS 21 0.42% COR 20 0.4% BBE 20 0.4% F3'5'H/CYP75A 20 0.4% TAT 20 0.4% 7DLH 19 0.38% DFR 19 0.38% CHS 16 0.32% CYP51G1 15 0.3% TYDC_DDC 14 0.28% CCoAOMT 14 0.28% F5H/CYP84A 14 0.28% CPR 11 0.22% GGPPS 11 0.22% FPPS 11 0.22% MPO 10 0.2% SMO1/SMO2 10 0.2% CPD/CYP90A1 10 0.2% CNMT 9 0.18% SQS/FDFT1 9 0.18% HMGR 9 0.18% ODC 8 0.16% CYP80B1 8 0.16% ANS/LDOX 8 0.16% DXS 8 0.16% MVK 8 0.16% AACT 8 0.16% ADC 7 0.14% ROT3/CYP90C1 7 0.14% MCT/IspD 7 0.14% CYP719 6 0.12% TDC 6 0.12% HPPR 6 0.12% DWF1 6 0.12% HMGS 6 0.12% LAMT 5 0.1% ISY 5 0.1% SQE 5 0.1% MVD 5 0.1% IDI 5 0.1% DET2 4 0.08% 6OMT_4OMT_SOMT 3 0.06% CHI 3 0.06% HYD1 3 0.06% DWF7 3 0.06% HDS/IspG 3 0.06% HDR/IspH 3 0.06% MDS/IspF 3 0.06% DXR 3 0.06% DWF5 2 0.04% PMK 2 0.04% CMK/IspE 2 0.04% XMT_MXMT_DXMT 1 0.02% FLS 1 0.02% CPI1 1 0.02% FK 1 0.02%

Species Pathway Results

The links below show identification results for this species within each pathway, instead of opening the global pathway overview.

Pathway	Candidate Genes	Families	Top family	Results
Terpenoid pathway	621	20	BAHD (247)	View species results
Phenylpropanoid pathway	530	12	POD (270)	View species results
Alkaloid pathway	443	24	7DLGT (85)	View species results
Flavonoid pathway	283	12	UFGT (173)	View species results
Rosmarinic acid pathway	196	7	C4H (82)	View species results
Steroid pathway	120	13	SMT1/SMT2/SMT3 (51)	View species results

Broad Catalytic Groups

P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.

Catalytic group	Families	Candidate genes	Included families
P450/oxygenase	23	1655	7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase	3	469	BAHD, HCT, RAS

Identification Result List

Search the public identification results for this species; click pathway or family legends above to narrow within this species.

Current family filter: CYP76

Gene	Pathway	Family	Confidence	Status	Best Target
BOampscaffold4590328140	Terpenoid	CYP76	medium	pass	CYP76__00025__sp_W8JIS5_IO_CATRO
BOampscaffold460332030	Terpenoid	CYP76	low	borderline	CYP76__00004__sp_A0A0Y0GRS3_C76H3_SALMI
BOampscaffold460334740	Terpenoid	CYP76	low	borderline	CYP76__00018__sp_Q69X58_C76M7_ORYSJ
BOampscaffold46980344150	Terpenoid	CYP76	medium	pass	CYP76__00004__sp_A0A0Y0GRS3_C76H3_SALMI
BOampscaffold490352860	Terpenoid	CYP76	medium	pass	CYP76__00009__sp_A0A1Z3GBS4_CYPH3_ISORU
BOampscaffold490352880	Terpenoid	CYP76	medium	borderline	CYP76__00013__sp_D1MI46_C76BA_SWEMU
BOampscaffold49280353760	Terpenoid	CYP76	low	borderline	CYP76__00011__sp_A0A3Q9R4N5_C76B7_ARNEU
BOampscaffold4940354090	Terpenoid	CYP76	low	borderline	CYP76__00024__sp_W0FKI0_DOX1_PERHD
BOampscaffold4940354470	Terpenoid	CYP76	low	borderline	CYP76__00014__sp_I3PFJ5_C76AD_BETVU
BOampscaffold50070365720	Terpenoid	CYP76	medium	borderline	CYP76__00022__sp_Q8VWZ7_C76B6_CATRO
BOampscaffold50358800	Terpenoid	CYP76	medium	pass	CYP76__00023__sp_S4UX02_CYPH1_SALMI
BOampscaffold50361070	Terpenoid	CYP76	low	borderline	CYP76__00025__sp_W8JIS5_IO_CATRO
BOampscaffold530370800	Terpenoid	CYP76	low	borderline	CYP76__00002__sp_A0A0C5QRZ2_C76H2_SALFT
BOampscaffold530371570	Terpenoid	CYP76	medium	borderline	CYP76__00013__sp_D1MI46_C76BA_SWEMU
BOampscaffold580383450	Terpenoid	CYP76	medium	pass	CYP76__00016__sp_P0DXJ6_C7631_LOPWI
BOampscaffold580383840	Terpenoid	CYP76	medium	pass	CYP76__00012__sp_A0AA51VJB7_C7694_LOPWI
BOampscaffold5870385340	Terpenoid	CYP76	low	borderline	CYP76__00012__sp_A0AA51VJB7_C7694_LOPWI
BOampscaffold630390530	Terpenoid	CYP76	medium	borderline	CYP76__00022__sp_Q8VWZ7_C76B6_CATRO
BOampscaffold630390550	Terpenoid	CYP76	medium	borderline	CYP76__00021__sp_Q6Z5I7_C76M6_ORYSJ
BOampscaffold630390940	Terpenoid	CYP76	medium	pass	CYP76__00009__sp_A0A1Z3GBS4_CYPH3_ISORU
BOampscaffold6480393240	Terpenoid	CYP76	medium	pass	CYP76__00009__sp_A0A1Z3GBS4_CYPH3_ISORU
BOampscaffold650394250	Terpenoid	CYP76	low	borderline	CYP76__00004__sp_A0A0Y0GRS3_C76H3_SALMI
BOampscaffold650394260	Terpenoid	CYP76	low	borderline	CYP76__00010__sp_A0A2K9RG08_CYBK1_VITAC
BOampscaffold7430404730	Terpenoid	CYP76	medium	borderline	CYP76__00010__sp_A0A2K9RG08_CYBK1_VITAC
BOampscaffold7430405550	Terpenoid	CYP76	medium	borderline	CYP76__00022__sp_Q8VWZ7_C76B6_CATRO
BOampscaffold7820416270	Terpenoid	CYP76	low	borderline	CYP76__00020__sp_Q6YTF5_C76M5_ORYSJ
BOampscaffold79140417410	Terpenoid	CYP76	medium	pass	CYP76__00022__sp_Q8VWZ7_C76B6_CATRO
BOampscaffold810419940	Terpenoid	CYP76	low	borderline	CYP76__00014__sp_I3PFJ5_C76AD_BETVU
BOampscaffold810422550	Terpenoid	CYP76	medium	pass	CYP76__00025__sp_W8JIS5_IO_CATRO
BOampscaffold8110424190	Terpenoid	CYP76	low	borderline	CYP76__00022__sp_Q8VWZ7_C76B6_CATRO
BOampscaffold830427090	Terpenoid	CYP76	medium	borderline	CYP76__00013__sp_D1MI46_C76BA_SWEMU
BOampscaffold8510432280	Terpenoid	CYP76	medium	borderline	CYP76__00009__sp_A0A1Z3GBS4_CYPH3_ISORU
BOampscaffold8510432290	Terpenoid	CYP76	medium	pass	CYP76__00022__sp_Q8VWZ7_C76B6_CATRO
BOampscaffold8510432410	Terpenoid	CYP76	medium	pass	CYP76__00013__sp_D1MI46_C76BA_SWEMU
BOampscaffold9080446300	Terpenoid	CYP76	medium	pass	CYP76__00025__sp_W8JIS5_IO_CATRO
BOampscaffold9080446960	Terpenoid	CYP76	medium	pass	CYP76__00012__sp_A0AA51VJB7_C7694_LOPWI
BOampscaffold9290455910	Terpenoid	CYP76	low	borderline	CYP76__00016__sp_P0DXJ6_C7631_LOPWI
BOampscaffold930456550	Terpenoid	CYP76	medium	pass	CYP76__00022__sp_Q8VWZ7_C76B6_CATRO
BOampscaffold930456570	Terpenoid	CYP76	medium	pass	CYP76__00020__sp_Q6YTF5_C76M5_ORYSJ
BOampscaffold930456600	Terpenoid	CYP76	medium	borderline	CYP76__00022__sp_Q8VWZ7_C76B6_CATRO
BOampscaffold930459140	Terpenoid	CYP76	medium	pass	CYP76__00020__sp_Q6YTF5_C76M5_ORYSJ
BOampscaffold930460270	Terpenoid	CYP76	medium	pass	CYP76__00013__sp_D1MI46_C76BA_SWEMU
BOampscaffold930460280	Terpenoid	CYP76	medium	borderline	CYP76__00013__sp_D1MI46_C76BA_SWEMU
BOampscaffold9310460340	Terpenoid	CYP76	medium	borderline	CYP76__00025__sp_W8JIS5_IO_CATRO
BOampscaffold9530464260	Terpenoid	CYP76	medium	pass	CYP76__00011__sp_A0A3Q9R4N5_C76B7_ARNEU
BOampscaffold9990470000	Terpenoid	CYP76	low	borderline	CYP76__00009__sp_A0A1Z3GBS4_CYPH3_ISORU