PlantSME Plant secondary metabolism enzyme database

Bonia amplexicaulis (bonia_amplexicaulis)

Imported from atlas release summary for Bonia amplexicaulis.

2193
Candidate Genes
104
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Site group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Current group 117
Eudicots
Site group 495
Species Metadata
Taxon group
Monocots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
Terpenoid pathway 28.32% Phenylpropanoid pathway 24.17% Alkaloid pathway 20.2% Flavonoid pathway 12.9% Rosmarinic acid pathway 8.94% Steroid pathway 5.47%
Family Distribution
BAHD 6.9% POD 6.05% C3'H/CYP98A 5.34% C4H 5.14% UGT 4.4% 4CL 4.11% 7DLGT 3.83% UFGT 3.65%
Other Families 60.57%
More Families (96)
IFS 157 3.17% T3O 147 2.96% CYP76 146 2.94% F3H 131 2.64% DWF4/CYP90B1 120 2.42% NMT 115 2.32% F3'H/CYP75B 105 2.12% STR 98 1.98% BR6OX2/CYP85A2 89 1.8% SMT1/SMT2/SMT3 85 1.71% CYP71 74 1.49% CODM/T6ODM 70 1.41% RAS 68 1.37% PMT 65 1.31% PYKS 61 1.23% H6H 61 1.23% CAD 59 1.19% LAC 59 1.19% HCT 59 1.19% CSE 57 1.15% TRI/TRII 51 1.03% TPS 50 1.01% CAS 47 0.95% SLS 46 0.93% G8O/G8H 42 0.85% PAL 42 0.85% IFR 40 0.81% CCR 37 0.75% GS 36 0.73% COMT 36 0.73% T16H 35 0.71% SGD 33 0.67% GES 33 0.67% ANR 33 0.67% 16OMT 29 0.58% CYP90D1 27 0.54% IO 25 0.5% NCS 25 0.5% 8HGO 23 0.46% BR6OX1/CYP85A1 23 0.46% FNS 21 0.42% COR 20 0.4% BBE 20 0.4% F3'5'H/CYP75A 20 0.4% TAT 20 0.4% 7DLH 19 0.38% DFR 19 0.38% CHS 16 0.32% CYP51G1 15 0.3% TYDC_DDC 14 0.28% CCoAOMT 14 0.28% F5H/CYP84A 14 0.28% CPR 11 0.22% GGPPS 11 0.22% FPPS 11 0.22% MPO 10 0.2% SMO1/SMO2 10 0.2% CPD/CYP90A1 10 0.2% CNMT 9 0.18% SQS/FDFT1 9 0.18% HMGR 9 0.18% ODC 8 0.16% CYP80B1 8 0.16% ANS/LDOX 8 0.16% DXS 8 0.16% MVK 8 0.16% AACT 8 0.16% ADC 7 0.14% ROT3/CYP90C1 7 0.14% MCT/IspD 7 0.14% CYP719 6 0.12% TDC 6 0.12% HPPR 6 0.12% DWF1 6 0.12% HMGS 6 0.12% LAMT 5 0.1% ISY 5 0.1% SQE 5 0.1% MVD 5 0.1% IDI 5 0.1% DET2 4 0.08% 6OMT_4OMT_SOMT 3 0.06% CHI 3 0.06% HYD1 3 0.06% DWF7 3 0.06% HDS/IspG 3 0.06% HDR/IspH 3 0.06% MDS/IspF 3 0.06% DXR 3 0.06% DWF5 2 0.04% PMK 2 0.04% CMK/IspE 2 0.04% XMT_MXMT_DXMT 1 0.02% FLS 1 0.02% CPI1 1 0.02% FK 1 0.02%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 621 20 BAHD (247) View species results
Phenylpropanoid pathway 530 12 POD (270) View species results
Alkaloid pathway 443 24 7DLGT (85) View species results
Flavonoid pathway 283 12 UFGT (173) View species results
Rosmarinic acid pathway 196 7 C4H (82) View species results
Steroid pathway 120 13 SMT1/SMT2/SMT3 (51) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 23 1655 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 469 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: NMT
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Gene Pathway Family Confidence Status Best Target
BOampscaffold7760412090 Alkaloid NMT medium pass NMT__00039__sp_Q84W92_ANM13_ARATH
BOampscaffold7760413130 Alkaloid NMT low borderline NMT__00020__sp_O23372_ATXR3_ARATH
BOampscaffold780415320 Alkaloid NMT low borderline NMT__00028__sp_Q2LAE1_ASHH2_ARATH
BOampscaffold810422440 Alkaloid NMT low borderline NMT__00049__sp_Q93YF5_SUVH1_TOBAC
BOampscaffold8110424240 Alkaloid NMT medium borderline NMT__00051__sp_Q96565_AMNMT_HORVV
BOampscaffold8470431020 Alkaloid NMT low borderline NMT__00035__sp_Q6K431_TRX1_ORYSJ
BOampscaffold8550433010 Alkaloid NMT medium borderline NMT__00023__sp_O82210_ANM12_ARATH
BOampscaffold8870439570 Alkaloid NMT low borderline NMT__00016__sp_F4JNX3_CMKMT_ARATH
BOampscaffold900442440 Alkaloid NMT medium borderline NMT__00001__sp_A0A075D654_ANMT_RAUSE
BOampscaffold900443330 Alkaloid NMT low borderline NMT__00032__sp_Q5PP37_ATXR2_ARATH
BOampscaffold9080445500 Alkaloid NMT low borderline NMT__00045__sp_Q8VYX1_PEAM1_WHEAT
BOampscaffold9110449880 Alkaloid NMT medium pass NMT__00034__sp_Q5VN06_CLF_ORYSJ
BOampscaffold9160450850 Alkaloid NMT medium borderline NMT__00053__sp_Q9C6B9_PEAM3_ARATH
BOampscaffold930457330 Alkaloid NMT medium borderline NMT__00023__sp_O82210_ANM12_ARATH
BOampscaffold9510463520 Alkaloid NMT medium pass NMT__00040__sp_Q84WW6_ASHH1_ARATH