Bonia amplexicaulis (bonia_amplexicaulis)

This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.

Pathway Coverage

6 Pathways

Terpenoid pathway 28.32% Phenylpropanoid pathway 24.17% Alkaloid pathway 20.2% Flavonoid pathway 12.9% Rosmarinic acid pathway 8.94% Steroid pathway 5.47%

Family Distribution

2193 Candidate Genes

BAHD 6.9% POD 6.05% C3'H/CYP98A 5.34% C4H 5.14% UGT 4.4% 4CL 4.11% 7DLGT 3.83% UFGT 3.65%

Other Families 60.57%

More Families (96)

IFS 157 3.17% T3O 147 2.96% CYP76 146 2.94% F3H 131 2.64% DWF4/CYP90B1 120 2.42% NMT 115 2.32% F3'H/CYP75B 105 2.12% STR 98 1.98% BR6OX2/CYP85A2 89 1.8% SMT1/SMT2/SMT3 85 1.71% CYP71 74 1.49% CODM/T6ODM 70 1.41% RAS 68 1.37% PMT 65 1.31% PYKS 61 1.23% H6H 61 1.23% CAD 59 1.19% LAC 59 1.19% HCT 59 1.19% CSE 57 1.15% TRI/TRII 51 1.03% TPS 50 1.01% CAS 47 0.95% SLS 46 0.93% G8O/G8H 42 0.85% PAL 42 0.85% IFR 40 0.81% CCR 37 0.75% GS 36 0.73% COMT 36 0.73% T16H 35 0.71% SGD 33 0.67% GES 33 0.67% ANR 33 0.67% 16OMT 29 0.58% CYP90D1 27 0.54% IO 25 0.5% NCS 25 0.5% 8HGO 23 0.46% BR6OX1/CYP85A1 23 0.46% FNS 21 0.42% COR 20 0.4% BBE 20 0.4% F3'5'H/CYP75A 20 0.4% TAT 20 0.4% 7DLH 19 0.38% DFR 19 0.38% CHS 16 0.32% CYP51G1 15 0.3% TYDC_DDC 14 0.28% CCoAOMT 14 0.28% F5H/CYP84A 14 0.28% CPR 11 0.22% GGPPS 11 0.22% FPPS 11 0.22% MPO 10 0.2% SMO1/SMO2 10 0.2% CPD/CYP90A1 10 0.2% CNMT 9 0.18% SQS/FDFT1 9 0.18% HMGR 9 0.18% ODC 8 0.16% CYP80B1 8 0.16% ANS/LDOX 8 0.16% DXS 8 0.16% MVK 8 0.16% AACT 8 0.16% ADC 7 0.14% ROT3/CYP90C1 7 0.14% MCT/IspD 7 0.14% CYP719 6 0.12% TDC 6 0.12% HPPR 6 0.12% DWF1 6 0.12% HMGS 6 0.12% LAMT 5 0.1% ISY 5 0.1% SQE 5 0.1% MVD 5 0.1% IDI 5 0.1% DET2 4 0.08% 6OMT_4OMT_SOMT 3 0.06% CHI 3 0.06% HYD1 3 0.06% DWF7 3 0.06% HDS/IspG 3 0.06% HDR/IspH 3 0.06% MDS/IspF 3 0.06% DXR 3 0.06% DWF5 2 0.04% PMK 2 0.04% CMK/IspE 2 0.04% XMT_MXMT_DXMT 1 0.02% FLS 1 0.02% CPI1 1 0.02% FK 1 0.02%

Species Pathway Results

The links below show identification results for this species within each pathway, instead of opening the global pathway overview.

Pathway	Candidate Genes	Families	Top family	Results
Terpenoid pathway	621	20	BAHD (247)	View species results
Phenylpropanoid pathway	530	12	POD (270)	View species results
Alkaloid pathway	443	24	7DLGT (85)	View species results
Flavonoid pathway	283	12	UFGT (173)	View species results
Rosmarinic acid pathway	196	7	C4H (82)	View species results
Steroid pathway	120	13	SMT1/SMT2/SMT3 (51)	View species results

Broad Catalytic Groups

P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.

Catalytic group	Families	Candidate genes	Included families
P450/oxygenase	23	1655	7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase	3	469	BAHD, HCT, RAS

Identification Result List

Search the public identification results for this species; click pathway or family legends above to narrow within this species.

Current family filter: POD

Gene	Pathway	Family	Confidence	Status	Best Target
BOampscaffold18070137930	Phenylpropanoid	POD	medium	pass	POD__00001__sp_A5H452_PER70_MAIZE
BOampscaffold1820138640	Phenylpropanoid	POD	medium	pass	POD__00027__sp_Q9XIV8_PERN1_TOBAC
BOampscaffold18260139220	Phenylpropanoid	POD	low	borderline	POD__00007__sp_P0C5C9_REHYA_ORYSJ
BOampscaffold18370139900	Phenylpropanoid	POD	medium	pass	POD__00026__sp_Q9XEX2_PRX2B_ARATH
BOampscaffold18980142190	Phenylpropanoid	POD	medium	pass	POD__00010__sp_P84516_PER1_SORBI
BOampscaffold19020142780	Phenylpropanoid	POD	medium	pass	POD__00002__sp_A5H8G4_PER1_MAIZE
BOampscaffold1910143320	Phenylpropanoid	POD	medium	pass	POD__00028__sp_Q9ZVD5_AGO4_ARATH
BOampscaffold1980148480	Phenylpropanoid	POD	medium	pass	POD__00021__sp_Q9LEH3_PER15_IPOBA
BOampscaffold1980148490	Phenylpropanoid	POD	medium	pass	POD__00021__sp_Q9LEH3_PER15_IPOBA
BOampscaffold1980148610	Phenylpropanoid	POD	medium	pass	POD__00024__sp_Q9SCX8_PPA17_ARATH
BOampscaffold1980150390	Phenylpropanoid	POD	medium	pass	POD__00012__sp_Q10N21_APX1_ORYSJ
BOampscaffold1980152890	Phenylpropanoid	POD	low	borderline	POD__00006__sp_O22850_GPX3_ARATH
BOampscaffold1980153030	Phenylpropanoid	POD	medium	pass	POD__00002__sp_A5H8G4_PER1_MAIZE
BOampscaffold1980154460	Phenylpropanoid	POD	medium	pass	POD__00028__sp_Q9ZVD5_AGO4_ARATH
BOampscaffold1980154650	Phenylpropanoid	POD	medium	pass	POD__00001__sp_A5H452_PER70_MAIZE
BOampscaffold2030157270	Phenylpropanoid	POD	medium	pass	POD__00021__sp_Q9LEH3_PER15_IPOBA
BOampscaffold20330157520	Phenylpropanoid	POD	low	borderline	POD__00010__sp_P84516_PER1_SORBI
BOampscaffold2040158530	Phenylpropanoid	POD	medium	pass	POD__00007__sp_P0C5C9_REHYA_ORYSJ
BOampscaffold2040158820	Phenylpropanoid	POD	medium	pass	POD__00019__sp_Q949Y3_PPA26_ARATH
BOampscaffold20600163050	Phenylpropanoid	POD	medium	pass	POD__00001__sp_A5H452_PER70_MAIZE
BOampscaffold20780163550	Phenylpropanoid	POD	medium	pass	POD__00027__sp_Q9XIV8_PERN1_TOBAC
BOampscaffold20780163560	Phenylpropanoid	POD	medium	pass	POD__00027__sp_Q9XIV8_PERN1_TOBAC
BOampscaffold20890163870	Phenylpropanoid	POD	medium	pass	POD__00019__sp_Q949Y3_PPA26_ARATH
BOampscaffold2090166560	Phenylpropanoid	POD	medium	pass	POD__00012__sp_Q10N21_APX1_ORYSJ
BOampscaffold2090168880	Phenylpropanoid	POD	medium	pass	POD__00006__sp_O22850_GPX3_ARATH
BOampscaffold2090169130	Phenylpropanoid	POD	medium	pass	POD__00002__sp_A5H8G4_PER1_MAIZE
BOampscaffold210172020	Phenylpropanoid	POD	low	borderline	POD__00021__sp_Q9LEH3_PER15_IPOBA
BOampscaffold210172240	Phenylpropanoid	POD	medium	pass	POD__00001__sp_A5H452_PER70_MAIZE
BOampscaffold21070173840	Phenylpropanoid	POD	medium	pass	POD__00024__sp_Q9SCX8_PPA17_ARATH
BOampscaffold2230181610	Phenylpropanoid	POD	medium	pass	POD__00006__sp_O22850_GPX3_ARATH
BOampscaffold2250184130	Phenylpropanoid	POD	low	borderline	POD__00002__sp_A5H8G4_PER1_MAIZE
BOampscaffold2250184140	Phenylpropanoid	POD	medium	pass	POD__00027__sp_Q9XIV8_PERN1_TOBAC
BOampscaffold22620185640	Phenylpropanoid	POD	medium	pass	POD__00010__sp_P84516_PER1_SORBI
BOampscaffold2280187960	Phenylpropanoid	POD	low	borderline	POD__00027__sp_Q9XIV8_PERN1_TOBAC
BOampscaffold2280188220	Phenylpropanoid	POD	low	borderline	POD__00012__sp_Q10N21_APX1_ORYSJ
BOampscaffold23230190130	Phenylpropanoid	POD	medium	pass	POD__00012__sp_Q10N21_APX1_ORYSJ
BOampscaffold23270190510	Phenylpropanoid	POD	medium	pass	POD__00002__sp_A5H8G4_PER1_MAIZE
BOampscaffold23580193520	Phenylpropanoid	POD	medium	pass	POD__00021__sp_Q9LEH3_PER15_IPOBA
BOampscaffold2440199590	Phenylpropanoid	POD	medium	pass	POD__00027__sp_Q9XIV8_PERN1_TOBAC
BOampscaffold2440201210	Phenylpropanoid	POD	medium	pass	POD__00027__sp_Q9XIV8_PERN1_TOBAC
BOampscaffold24460202060	Phenylpropanoid	POD	low	borderline	POD__00021__sp_Q9LEH3_PER15_IPOBA
BOampscaffold24860203340	Phenylpropanoid	POD	medium	pass	POD__00001__sp_A5H452_PER70_MAIZE
BOampscaffold24950203990	Phenylpropanoid	POD	medium	pass	POD__00027__sp_Q9XIV8_PERN1_TOBAC
BOampscaffold2500204540	Phenylpropanoid	POD	medium	pass	POD__00027__sp_Q9XIV8_PERN1_TOBAC
BOampscaffold25090204820	Phenylpropanoid	POD	low	borderline	POD__00010__sp_P84516_PER1_SORBI
BOampscaffold2550206440	Phenylpropanoid	POD	medium	pass	POD__00010__sp_P84516_PER1_SORBI
BOampscaffold2550206450	Phenylpropanoid	POD	medium	pass	POD__00002__sp_A5H8G4_PER1_MAIZE
BOampscaffold2550206460	Phenylpropanoid	POD	medium	pass	POD__00002__sp_A5H8G4_PER1_MAIZE
BOampscaffold2550207390	Phenylpropanoid	POD	medium	pass	POD__00002__sp_A5H8G4_PER1_MAIZE
BOampscaffold25590207810	Phenylpropanoid	POD	medium	pass	POD__00028__sp_Q9ZVD5_AGO4_ARATH