Bonia amplexicaulis (bonia_amplexicaulis)
Imported from atlas release summary for Bonia amplexicaulis.
2193
Candidate Genes
104
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
6
Pathways
Family Distribution
2193
Candidate Genes
BAHD
6.9%
POD
6.05%
C3'H/CYP98A
5.34%
C4H
5.14%
UGT
4.4%
4CL
4.11%
7DLGT
3.83%
UFGT
3.65%
Other Families
60.57%
More Families (96)
IFS
157
3.17%
T3O
147
2.96%
CYP76
146
2.94%
F3H
131
2.64%
DWF4/CYP90B1
120
2.42%
NMT
115
2.32%
F3'H/CYP75B
105
2.12%
STR
98
1.98%
BR6OX2/CYP85A2
89
1.8%
SMT1/SMT2/SMT3
85
1.71%
CYP71
74
1.49%
CODM/T6ODM
70
1.41%
RAS
68
1.37%
PMT
65
1.31%
PYKS
61
1.23%
H6H
61
1.23%
CAD
59
1.19%
LAC
59
1.19%
HCT
59
1.19%
CSE
57
1.15%
TRI/TRII
51
1.03%
TPS
50
1.01%
CAS
47
0.95%
SLS
46
0.93%
G8O/G8H
42
0.85%
PAL
42
0.85%
IFR
40
0.81%
CCR
37
0.75%
GS
36
0.73%
COMT
36
0.73%
T16H
35
0.71%
SGD
33
0.67%
GES
33
0.67%
ANR
33
0.67%
16OMT
29
0.58%
CYP90D1
27
0.54%
IO
25
0.5%
NCS
25
0.5%
8HGO
23
0.46%
BR6OX1/CYP85A1
23
0.46%
FNS
21
0.42%
COR
20
0.4%
BBE
20
0.4%
F3'5'H/CYP75A
20
0.4%
TAT
20
0.4%
7DLH
19
0.38%
DFR
19
0.38%
CHS
16
0.32%
CYP51G1
15
0.3%
TYDC_DDC
14
0.28%
CCoAOMT
14
0.28%
F5H/CYP84A
14
0.28%
CPR
11
0.22%
GGPPS
11
0.22%
FPPS
11
0.22%
MPO
10
0.2%
SMO1/SMO2
10
0.2%
CPD/CYP90A1
10
0.2%
CNMT
9
0.18%
SQS/FDFT1
9
0.18%
HMGR
9
0.18%
ODC
8
0.16%
CYP80B1
8
0.16%
ANS/LDOX
8
0.16%
DXS
8
0.16%
MVK
8
0.16%
AACT
8
0.16%
ADC
7
0.14%
ROT3/CYP90C1
7
0.14%
MCT/IspD
7
0.14%
CYP719
6
0.12%
TDC
6
0.12%
HPPR
6
0.12%
DWF1
6
0.12%
HMGS
6
0.12%
LAMT
5
0.1%
ISY
5
0.1%
SQE
5
0.1%
MVD
5
0.1%
IDI
5
0.1%
DET2
4
0.08%
6OMT_4OMT_SOMT
3
0.06%
CHI
3
0.06%
HYD1
3
0.06%
DWF7
3
0.06%
HDS/IspG
3
0.06%
HDR/IspH
3
0.06%
MDS/IspF
3
0.06%
DXR
3
0.06%
DWF5
2
0.04%
PMK
2
0.04%
CMK/IspE
2
0.04%
XMT_MXMT_DXMT
1
0.02%
FLS
1
0.02%
CPI1
1
0.02%
FK
1
0.02%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Candidate Genes | Families | Top family | Results |
|---|---|---|---|---|
| Terpenoid pathway | 621 | 20 | BAHD (247) | View species results |
| Phenylpropanoid pathway | 530 | 12 | POD (270) | View species results |
| Alkaloid pathway | 443 | 24 | 7DLGT (85) | View species results |
| Flavonoid pathway | 283 | 12 | UFGT (173) | View species results |
| Rosmarinic acid pathway | 196 | 7 | C4H (82) | View species results |
| Steroid pathway | 120 | 13 | SMT1/SMT2/SMT3 (51) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Families | Candidate genes | Included families |
|---|---|---|---|
| P450/oxygenase | 23 | 1655 | 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 3 | 469 | BAHD, HCT, RAS |
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: STR
| Gene | Pathway | Family | Confidence | Status | Best Target |
|---|---|---|---|---|---|
| BOampscaffold30241460 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| BOampscaffold3230258770 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| BOampscaffold3270265460 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| BOampscaffold3290266130 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| BOampscaffold350272560 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| BOampscaffold350275700 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| BOampscaffold350278300 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| BOampscaffold350278850 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| BOampscaffold3680283690 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| BOampscaffold3740288850 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| BOampscaffold3740289510 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| BOampscaffold3890296360 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| BOampscaffold3890296370 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| BOampscaffold3950299620 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| BOampscaffold3970300250 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| BOampscaffold3980302440 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| BOampscaffold3980304240 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| BOampscaffold43440318460 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| BOampscaffold4590327330 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| BOampscaffold4590329020 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| BOampscaffold460332110 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| BOampscaffold470344630 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| BOampscaffold490352770 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| BOampscaffold50359180 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| BOampscaffold50360590 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| BOampscaffold50362350 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| BOampscaffold50362770 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| BOampscaffold50363290 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| BOampscaffold5230369720 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| BOampscaffold530373390 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| BOampscaffold540377280 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| BOampscaffold570382440 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| BOampscaffold6030386710 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| BOampscaffold69760398640 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| BOampscaffold7090400580 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| BOampscaffold73630402730 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| BOampscaffold7430403880 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| BOampscaffold7430405870 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| BOampscaffold7430406330 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| BOampscaffold7430406340 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| BOampscaffold8320427220 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| BOampscaffold8540432860 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| BOampscaffold8550433720 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| BOampscaffold8870439630 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| BOampscaffold9160451480 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| BOampscaffold9590464770 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| BOampscaffold9590466270 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| BOampscaffold9860468420 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |