Bonia amplexicaulis (bonia_amplexicaulis)
Imported from atlas release summary for Bonia amplexicaulis.
2552
Candidate Protein Records
2193
Pathway-Level Records
4958
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
- Download candidate protein FASTA for this species
Pathway Coverage
6
Pathways
Family Distribution
4958
Family-Level Calls
BAHD
6.9%
POD
6.05%
C3'H/CYP98A
5.34%
C4H
5.14%
UGT
4.4%
4CL
4.11%
7DLGT
3.83%
UFGT
3.65%
Other Families
60.57%
More Families (96)
IFS
157
3.17%
T3O
147
2.96%
CYP76
146
2.94%
F3H
131
2.64%
DWF4/CYP90B1
120
2.42%
NMT
115
2.32%
F3'H/CYP75B
105
2.12%
STR
98
1.98%
BR6OX2/CYP85A2
89
1.8%
SMT1/SMT2/SMT3
85
1.71%
CYP71
74
1.49%
CODM/T6ODM
70
1.41%
RAS
68
1.37%
PMT
65
1.31%
PYKS
61
1.23%
H6H
61
1.23%
CAD
59
1.19%
LAC
59
1.19%
HCT
59
1.19%
CSE
57
1.15%
TRI/TRII
51
1.03%
TPS
50
1.01%
CAS
47
0.95%
SLS
46
0.93%
G8O/G8H
42
0.85%
PAL
42
0.85%
IFR
40
0.81%
CCR
37
0.75%
GS
36
0.73%
COMT
36
0.73%
T16H
35
0.71%
SGD
33
0.67%
GES
33
0.67%
ANR
33
0.67%
16OMT
29
0.58%
CYP90D1
27
0.54%
IO
25
0.5%
NCS
25
0.5%
8HGO
23
0.46%
BR6OX1/CYP85A1
23
0.46%
FNS
21
0.42%
COR
20
0.4%
BBE
20
0.4%
F3'5'H/CYP75A
20
0.4%
TAT
20
0.4%
7DLH
19
0.38%
DFR
19
0.38%
CHS
16
0.32%
CYP51G1
15
0.3%
TYDC_DDC
14
0.28%
CCoAOMT
14
0.28%
F5H/CYP84A
14
0.28%
CPR
11
0.22%
GGPPS
11
0.22%
FPPS
11
0.22%
MPO
10
0.2%
SMO1/SMO2
10
0.2%
CPD/CYP90A1
10
0.2%
CNMT
9
0.18%
SQS/FDFT1
9
0.18%
HMGR
9
0.18%
ODC
8
0.16%
CYP80B1
8
0.16%
ANS/LDOX
8
0.16%
DXS
8
0.16%
MVK
8
0.16%
AACT
8
0.16%
ADC
7
0.14%
ROT3/CYP90C1
7
0.14%
MCT/IspD
7
0.14%
CYP719
6
0.12%
TDC
6
0.12%
HPPR
6
0.12%
DWF1
6
0.12%
HMGS
6
0.12%
LAMT
5
0.1%
ISY
5
0.1%
SQE
5
0.1%
MVD
5
0.1%
IDI
5
0.1%
DET2
4
0.08%
6OMT_4OMT_SOMT
3
0.06%
CHI
3
0.06%
HYD1
3
0.06%
DWF7
3
0.06%
HDS/IspG
3
0.06%
HDR/IspH
3
0.06%
MDS/IspF
3
0.06%
DXR
3
0.06%
DWF5
2
0.04%
PMK
2
0.04%
CMK/IspE
2
0.04%
XMT_MXMT_DXMT
1
0.02%
FLS
1
0.02%
CPI1
1
0.02%
FK
1
0.02%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Pathway-Level Records | Detected Families | Top family | Results |
|---|---|---|---|---|
| Terpenoid pathway | 621 | 20 | BAHD (247) | View species results |
| Phenylpropanoid pathway | 530 | 12 | POD (270) | View species results |
| Alkaloid pathway | 443 | 24 | 7DLGT (85) | View species results |
| Flavonoid pathway | 283 | 12 | UFGT (173) | View species results |
| Rosmarinic acid pathway | 196 | 7 | C4H (82) | View species results |
| Steroid pathway | 120 | 13 | SMT1/SMT2/SMT3 (51) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Detected families | Assignment calls | Included families |
|---|---|---|---|
| P450/oxygenase | 23 | 1655 | 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 3 | 469 | BAHD, HCT, RAS |
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
| Protein/Isoform Record | Pathway | Family | Confidence | Status | Best Target |
|---|---|---|---|---|---|
| BOampscaffold27630216560 | Alkaloid | SLS | medium | borderline | SLS__00002__sp_U5NDT8_SLS2_CATRO |
| BOampscaffold27630216580 | Alkaloid | SLS | medium | borderline | SLS__00002__sp_U5NDT8_SLS2_CATRO |
| BOampscaffold2790218570 | Alkaloid | SLS | medium | borderline | SLS__00001__sp_Q05047_SLS1_CATRO |
| BOampscaffold280222140 | Alkaloid | SLS | medium | borderline | SLS__00001__sp_Q05047_SLS1_CATRO |
| BOampscaffold2950233710 | Alkaloid | SLS | medium | borderline | SLS__00001__sp_Q05047_SLS1_CATRO |
| BOampscaffold2950233720 | Alkaloid | SLS | medium | borderline | SLS__00001__sp_Q05047_SLS1_CATRO |
| BOampscaffold3040242930 | Alkaloid | SLS | low | borderline | SLS__00002__sp_U5NDT8_SLS2_CATRO |
| BOampscaffold3230262540 | Alkaloid | SLS | medium | borderline | SLS__00001__sp_Q05047_SLS1_CATRO |
| BOampscaffold350277320 | Alkaloid | SLS | medium | borderline | SLS__00001__sp_Q05047_SLS1_CATRO |
| BOampscaffold3680283780 | Alkaloid | SLS | medium | borderline | SLS__00002__sp_U5NDT8_SLS2_CATRO |
| BOampscaffold38400294620 | Alkaloid | SLS | medium | borderline | SLS__00002__sp_U5NDT8_SLS2_CATRO |
| BOampscaffold3980303170 | Alkaloid | SLS | medium | borderline | SLS__00001__sp_Q05047_SLS1_CATRO |
| BOampscaffold4290315510 | Alkaloid | SLS | medium | borderline | SLS__00002__sp_U5NDT8_SLS2_CATRO |
| BOampscaffold4290315540 | Alkaloid | SLS | medium | borderline | SLS__00002__sp_U5NDT8_SLS2_CATRO |
| BOampscaffold4290315560 | Alkaloid | SLS | medium | borderline | SLS__00002__sp_U5NDT8_SLS2_CATRO |
| BOampscaffold450322060 | Alkaloid | SLS | medium | borderline | SLS__00002__sp_U5NDT8_SLS2_CATRO |
| BOampscaffold46740342360 | Alkaloid | SLS | medium | borderline | SLS__00002__sp_U5NDT8_SLS2_CATRO |
| BOampscaffold4940354470 | Alkaloid | SLS | medium | borderline | SLS__00002__sp_U5NDT8_SLS2_CATRO |
| BOampscaffold50362300 | Alkaloid | SLS | medium | borderline | SLS__00001__sp_Q05047_SLS1_CATRO |
| BOampscaffold540377120 | Alkaloid | SLS | medium | borderline | SLS__00001__sp_Q05047_SLS1_CATRO |
| BOampscaffold7430405800 | Alkaloid | SLS | medium | borderline | SLS__00001__sp_Q05047_SLS1_CATRO |
| BOampscaffold7760411390 | Alkaloid | SLS | medium | borderline | SLS__00001__sp_Q05047_SLS1_CATRO |
| BOampscaffold810419940 | Alkaloid | SLS | medium | borderline | SLS__00001__sp_Q05047_SLS1_CATRO |
| BOampscaffold9590465540 | Alkaloid | SLS | medium | borderline | SLS__00001__sp_Q05047_SLS1_CATRO |
| BOampC108629730005010 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| BOampC109426270008260 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| BOampscaffold1020027050 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| BOampscaffold10300028730 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| BOampscaffold1050032920 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| BOampscaffold10520033170 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| BOampscaffold10960039380 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| BOampscaffold11180043610 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| BOampscaffold1130045800 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| BOampscaffold1210055490 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| BOampscaffold13060070290 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| BOampscaffold13650074320 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| BOampscaffold140079400 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| BOampscaffold15990100280 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| BOampscaffold160103770 | Alkaloid | STR | low | borderline | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| BOampscaffold1660116180 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| BOampscaffold1660117430 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| BOampscaffold1660118900 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| BOampscaffold16770121710 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| BOampscaffold17860134490 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| BOampscaffold1910143190 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| BOampscaffold19270144230 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| BOampscaffold1980150230 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| BOampscaffold20520162000 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| BOampscaffold2090166330 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| BOampscaffold210170610 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |