Ocimum basilicum (ocimum_basilicum)
Imported from atlas release summary for Ocimum basilicum.
5408
Candidate Protein Records
4737
Pathway-Level Records
12960
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
- Download candidate protein FASTA for this species
Pathway Coverage
6
Pathways
Family Distribution
12960
Family-Level Calls
C4H
8.12%
C3'H/CYP98A
6.8%
BAHD
6.43%
CYP76
4.51%
T3O
4.44%
IFS
4.14%
UGT
3.48%
7DLGT
3.34%
Other Families
58.74%
More Families (97)
UFGT
426
3.29%
F3'H/CYP75B
351
2.71%
4CL
321
2.48%
BR6OX2/CYP85A2
309
2.38%
CYP71
290
2.24%
TPS
282
2.18%
POD
263
2.03%
F3H
260
2.01%
DWF4/CYP90B1
253
1.95%
HCT
243
1.88%
GES
242
1.87%
CAD
203
1.57%
LAC
201
1.55%
CODM/T6ODM
167
1.29%
BBE
161
1.24%
RAS
155
1.2%
T16H
151
1.17%
CAS
150
1.16%
G8O/G8H
142
1.1%
NMT
141
1.09%
CYP90D1
140
1.08%
TAT
136
1.05%
PMT
128
0.99%
STR
117
0.9%
H6H
104
0.8%
F5H/CYP84A
101
0.78%
SMT1/SMT2/SMT3
93
0.72%
PYKS
91
0.7%
GS
91
0.7%
FNS
91
0.7%
CYP51G1
91
0.7%
ANR
90
0.69%
LAMT
87
0.67%
TRI/TRII
78
0.6%
IO
78
0.6%
NCS
78
0.6%
COMT
78
0.6%
IFR
77
0.59%
F3'5'H/CYP75A
69
0.53%
7DLH
66
0.51%
CSE
64
0.49%
CCR
55
0.42%
SLS
54
0.42%
16OMT
53
0.41%
BR6OX1/CYP85A1
53
0.41%
CPD/CYP90A1
48
0.37%
8HGO
37
0.29%
SGD
37
0.29%
COR
36
0.28%
PAL
36
0.28%
CCoAOMT
35
0.27%
CYP80B1
31
0.24%
6OMT_4OMT_SOMT
28
0.22%
DFR
28
0.22%
CHS
25
0.19%
CPR
23
0.18%
HPPR
23
0.18%
ROT3/CYP90C1
21
0.16%
FPPS
21
0.16%
CNMT
19
0.15%
MPO
18
0.14%
ANS/LDOX
17
0.13%
MVK
17
0.13%
HMGR
16
0.12%
TYDC_DDC
15
0.12%
ISY
15
0.12%
GGPPS
14
0.11%
AACT
13
0.1%
CYP719
12
0.09%
DXR
12
0.09%
HDR/IspH
12
0.09%
MVD
11
0.08%
DXS
11
0.08%
SQS/FDFT1
10
0.08%
TDC
9
0.07%
CHI
8
0.06%
SQE
7
0.05%
SMO1/SMO2
7
0.05%
IDI
7
0.05%
CYP80F1
6
0.05%
DET2
6
0.05%
ADC
5
0.04%
XMT_MXMT_DXMT
5
0.04%
HYD1
5
0.04%
HMGS
5
0.04%
FLS
3
0.02%
CPI1
3
0.02%
CMK/IspE
3
0.02%
PMK
3
0.02%
HDS/IspG
3
0.02%
ODC
2
0.02%
DWF5
2
0.02%
DWF7
2
0.02%
DWF1
2
0.02%
MDS/IspF
2
0.02%
MCT/IspD
2
0.02%
GPPS
1
0.01%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Pathway-Level Records | Detected Families | Top family | Results |
|---|---|---|---|---|
| Terpenoid pathway | 1561 | 19 | BAHD (533) | View species results |
| Alkaloid pathway | 913 | 24 | GES (214) | View species results |
| Phenylpropanoid pathway | 903 | 13 | POD (251) | View species results |
| Rosmarinic acid pathway | 611 | 7 | C4H (314) | View species results |
| Flavonoid pathway | 564 | 15 | UFGT (391) | View species results |
| Steroid pathway | 185 | 12 | CAS (93) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Detected families | Assignment calls | Included families |
|---|---|---|---|
| P450/oxygenase | 24 | 5896 | 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 3 | 1231 | BAHD, HCT, RAS |
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
| Protein/Isoform Record | Pathway | Family | Confidence | Status |
|---|---|---|---|---|
| ocimum_basilicum_560.g36.t1 | Alkaloid | LAMT | medium | pass |
| ocimum_basilicum_560.g37.t1 | Alkaloid | LAMT | medium | borderline |
| ocimum_basilicum_560.g39.t1 | Alkaloid | LAMT | medium | borderline |
| ocimum_basilicum_560.g41.t1 | Alkaloid | LAMT | medium | borderline |
| ocimum_basilicum_560.g42.t1 | Alkaloid | LAMT | medium | borderline |
| ocimum_basilicum_560.g43.t1 | Alkaloid | LAMT | medium | borderline |
| ocimum_basilicum_560.g44.t1 | Alkaloid | LAMT | medium | pass |
| ocimum_basilicum_560.g45.t1 | Alkaloid | LAMT | medium | borderline |
| ocimum_basilicum_560.g47.t1 | Alkaloid | LAMT | medium | borderline |
| ocimum_basilicum_657.g21.t1 | Alkaloid | LAMT | medium | pass |
| ocimum_basilicum_657.g22.t1 | Alkaloid | LAMT | medium | pass |
| ocimum_basilicum_748.g98.t1 | Alkaloid | LAMT | low | borderline |
| ocimum_basilicum_752.g128.t1 | Alkaloid | LAMT | medium | borderline |
| ocimum_basilicum_368867.g1.t1 | Alkaloid | MPO | medium | pass |
| ocimum_basilicum_368867.g2.t1 | Alkaloid | MPO | medium | pass |
| ocimum_basilicum_373898.g1.t1 | Alkaloid | MPO | medium | pass |
| ocimum_basilicum_373898.g2.t1 | Alkaloid | MPO | medium | pass |
| ocimum_basilicum_377482.g2.t1 | Alkaloid | MPO | high | pass |
| ocimum_basilicum_380021.g2.t1 | Alkaloid | MPO | high | pass |
| ocimum_basilicum_384464.g134.t1 | Alkaloid | MPO | medium | pass |
| ocimum_basilicum_384633.g10.t1 | Alkaloid | MPO | low | borderline |
| ocimum_basilicum_385027.g4.t1 | Alkaloid | MPO | medium | pass |
| ocimum_basilicum_385027.g5.t1 | Alkaloid | MPO | medium | pass |
| ocimum_basilicum_386050.g8.t1 | Alkaloid | MPO | medium | pass |
| ocimum_basilicum_516.g75.t1 | Alkaloid | MPO | medium | pass |
| ocimum_basilicum_557.g104.t1 | Alkaloid | MPO | medium | pass |
| ocimum_basilicum_564.g105.t1 | Alkaloid | MPO | medium | pass |
| ocimum_basilicum_564.g120.t1 | Alkaloid | MPO | low | borderline |
| ocimum_basilicum_652.g22.t1 | Alkaloid | MPO | medium | pass |
| ocimum_basilicum_749.g11.t1 | Alkaloid | MPO | medium | pass |
| ocimum_basilicum_755.g20.t1 | Alkaloid | MPO | medium | pass |
| ocimum_basilicum_1289.g1.t1 | Alkaloid | NCS | medium | borderline |
| ocimum_basilicum_1701.g183.t1 | Alkaloid | NCS | medium | borderline |
| ocimum_basilicum_1701.g187.t1 | Alkaloid | NCS | medium | borderline |
| ocimum_basilicum_1842.g84.t1 | Alkaloid | NCS | medium | borderline |
| ocimum_basilicum_1968.g154.t1 | Alkaloid | NCS | medium | borderline |
| ocimum_basilicum_1986.g42.t1 | Alkaloid | NCS | medium | borderline |
| ocimum_basilicum_325413.g1.t1 | Alkaloid | NCS | low | borderline |
| ocimum_basilicum_343677.g1.t1 | Alkaloid | NCS | medium | pass |
| ocimum_basilicum_350670.g2.t1 | Alkaloid | NCS | medium | borderline |
| ocimum_basilicum_368820.g2.t1 | Alkaloid | NCS | low | borderline |
| ocimum_basilicum_371.g77.t1 | Alkaloid | NCS | low | borderline |
| ocimum_basilicum_372357.g2.t1 | Alkaloid | NCS | medium | borderline |
| ocimum_basilicum_375.g167.t1 | Alkaloid | NCS | medium | borderline |
| ocimum_basilicum_377604.g3.t1 | Alkaloid | NCS | medium | borderline |
| ocimum_basilicum_377612.g1.t1 | Alkaloid | NCS | low | borderline |
| ocimum_basilicum_380969.g21.t1 | Alkaloid | NCS | low | borderline |
| ocimum_basilicum_381392.g1.t1 | Alkaloid | NCS | medium | pass |
| ocimum_basilicum_381392.g2.t1 | Alkaloid | NCS | low | borderline |
| ocimum_basilicum_381812.g37.t1 | Alkaloid | NCS | medium | borderline |