PlantSME Plant secondary metabolism enzyme database

Ocimum basilicum (ocimum_basilicum)

Imported from atlas release summary for Ocimum basilicum.

4737
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Site group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Site group 117
Eudicots
Current group 495
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
Terpenoid pathway 32.95% Alkaloid pathway 19.27% Phenylpropanoid pathway 19.06% Rosmarinic acid pathway 12.9% Flavonoid pathway 11.91% Steroid pathway 3.91%
Family Distribution
C4H 8.12% C3'H/CYP98A 6.8% BAHD 6.43% CYP76 4.51% T3O 4.44% IFS 4.14% UGT 3.48% 7DLGT 3.34%
Other Families 58.74%
More Families (97)
UFGT 426 3.29% F3'H/CYP75B 351 2.71% 4CL 321 2.48% BR6OX2/CYP85A2 309 2.38% CYP71 290 2.24% TPS 282 2.18% POD 263 2.03% F3H 260 2.01% DWF4/CYP90B1 253 1.95% HCT 243 1.88% GES 242 1.87% CAD 203 1.57% LAC 201 1.55% CODM/T6ODM 167 1.29% BBE 161 1.24% RAS 155 1.2% T16H 151 1.17% CAS 150 1.16% G8O/G8H 142 1.1% NMT 141 1.09% CYP90D1 140 1.08% TAT 136 1.05% PMT 128 0.99% STR 117 0.9% H6H 104 0.8% F5H/CYP84A 101 0.78% SMT1/SMT2/SMT3 93 0.72% PYKS 91 0.7% GS 91 0.7% FNS 91 0.7% CYP51G1 91 0.7% ANR 90 0.69% LAMT 87 0.67% TRI/TRII 78 0.6% IO 78 0.6% NCS 78 0.6% COMT 78 0.6% IFR 77 0.59% F3'5'H/CYP75A 69 0.53% 7DLH 66 0.51% CSE 64 0.49% CCR 55 0.42% SLS 54 0.42% 16OMT 53 0.41% BR6OX1/CYP85A1 53 0.41% CPD/CYP90A1 48 0.37% 8HGO 37 0.29% SGD 37 0.29% COR 36 0.28% PAL 36 0.28% CCoAOMT 35 0.27% CYP80B1 31 0.24% 6OMT_4OMT_SOMT 28 0.22% DFR 28 0.22% CHS 25 0.19% CPR 23 0.18% HPPR 23 0.18% ROT3/CYP90C1 21 0.16% FPPS 21 0.16% CNMT 19 0.15% MPO 18 0.14% ANS/LDOX 17 0.13% MVK 17 0.13% HMGR 16 0.12% TYDC_DDC 15 0.12% ISY 15 0.12% GGPPS 14 0.11% AACT 13 0.1% CYP719 12 0.09% DXR 12 0.09% HDR/IspH 12 0.09% MVD 11 0.08% DXS 11 0.08% SQS/FDFT1 10 0.08% TDC 9 0.07% CHI 8 0.06% SQE 7 0.05% SMO1/SMO2 7 0.05% IDI 7 0.05% CYP80F1 6 0.05% DET2 6 0.05% ADC 5 0.04% XMT_MXMT_DXMT 5 0.04% HYD1 5 0.04% HMGS 5 0.04% FLS 3 0.02% CPI1 3 0.02% CMK/IspE 3 0.02% PMK 3 0.02% HDS/IspG 3 0.02% ODC 2 0.02% DWF5 2 0.02% DWF7 2 0.02% DWF1 2 0.02% MDS/IspF 2 0.02% MCT/IspD 2 0.02% GPPS 1 0.01%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 1561 19 BAHD (533) View species results
Alkaloid pathway 913 24 GES (214) View species results
Phenylpropanoid pathway 903 13 POD (251) View species results
Rosmarinic acid pathway 611 7 C4H (314) View species results
Flavonoid pathway 564 15 UFGT (391) View species results
Steroid pathway 185 12 CAS (93) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 5896 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 1231 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: ROT3/CYP90C1
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Gene Pathway Family Confidence Status
ocimum_basilicum_1583.g82.t1 Steroid ROT3/CYP90C1 medium pass
ocimum_basilicum_1701.g164.t1 Steroid ROT3/CYP90C1 medium borderline
ocimum_basilicum_1874.g25.t1 Steroid ROT3/CYP90C1 medium borderline
ocimum_basilicum_1924.g92.t1 Steroid ROT3/CYP90C1 medium borderline
ocimum_basilicum_1953.g83.t1 Steroid ROT3/CYP90C1 medium borderline
ocimum_basilicum_230828.g1.t1 Steroid ROT3/CYP90C1 medium borderline
ocimum_basilicum_374603.g2.t1 Steroid ROT3/CYP90C1 low borderline
ocimum_basilicum_383458.g2.t1 Steroid ROT3/CYP90C1 medium borderline
ocimum_basilicum_383854.g5.t1 Steroid ROT3/CYP90C1 medium borderline
ocimum_basilicum_384984.g72.t1 Steroid ROT3/CYP90C1 medium borderline
ocimum_basilicum_385037.g20.t1 Steroid ROT3/CYP90C1 medium borderline
ocimum_basilicum_385037.g21.t1 Steroid ROT3/CYP90C1 medium borderline
ocimum_basilicum_385346.g195.t1 Steroid ROT3/CYP90C1 medium borderline
ocimum_basilicum_386156.g1.t1 Steroid ROT3/CYP90C1 medium borderline
ocimum_basilicum_410491.g4.t1 Steroid ROT3/CYP90C1 medium borderline
ocimum_basilicum_410493.g4.t1 Steroid ROT3/CYP90C1 medium borderline
ocimum_basilicum_470.g74.t1 Steroid ROT3/CYP90C1 medium borderline
ocimum_basilicum_470.g75.t1 Steroid ROT3/CYP90C1 medium borderline
ocimum_basilicum_546452.g1.t1 Steroid ROT3/CYP90C1 medium borderline
ocimum_basilicum_552.g120.t1 Steroid ROT3/CYP90C1 low borderline
ocimum_basilicum_801.g5.t1 Steroid ROT3/CYP90C1 medium borderline