PlantSME Plant secondary metabolism enzyme database

Ocimum basilicum (ocimum_basilicum)

Imported from atlas release summary for Ocimum basilicum.

5408
Candidate Protein Records
4737
Pathway-Level Records
12960
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 1561 19 BAHD (533) View species results
Alkaloid pathway 913 24 GES (214) View species results
Phenylpropanoid pathway 903 13 POD (251) View species results
Rosmarinic acid pathway 611 7 C4H (314) View species results
Flavonoid pathway 564 15 UFGT (391) View species results
Steroid pathway 185 12 CAS (93) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 24 5896 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 1231 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Protein/Isoform Record Pathway Family Confidence Status
ocimum_basilicum_385835.g49.t1 Alkaloid TYDC_DDC medium borderline
ocimum_basilicum_440458.g1.t1 Alkaloid TYDC_DDC medium borderline
ocimum_basilicum_440459.g1.t1 Alkaloid TYDC_DDC medium borderline
ocimum_basilicum_446734.g2.t1 Alkaloid TYDC_DDC medium borderline
ocimum_basilicum_446737.g2.t1 Alkaloid TYDC_DDC medium borderline
ocimum_basilicum_681.g96.t1 Alkaloid TYDC_DDC medium borderline
ocimum_basilicum_683.g30.t1 Alkaloid TYDC_DDC medium borderline
ocimum_basilicum_683.g39.t1 Alkaloid TYDC_DDC medium borderline
ocimum_basilicum_1950.g16.t1 Alkaloid XMT_MXMT_DXMT low borderline
ocimum_basilicum_379469.g1.t1 Alkaloid XMT_MXMT_DXMT medium borderline
ocimum_basilicum_382902.g6.t1 Alkaloid XMT_MXMT_DXMT medium borderline
ocimum_basilicum_383214.g82.t1 Alkaloid XMT_MXMT_DXMT medium borderline
ocimum_basilicum_553.g124.t1 Alkaloid XMT_MXMT_DXMT low borderline
ocimum_basilicum_1023.g127.t1 Flavonoid 4CL low borderline
ocimum_basilicum_1242.g55.t1 Flavonoid 4CL medium pass
ocimum_basilicum_1320.g54.t1 Flavonoid 4CL low borderline
ocimum_basilicum_1717.g8.t1 Flavonoid 4CL low borderline
ocimum_basilicum_1879.g47.t1 Flavonoid 4CL medium pass
ocimum_basilicum_1887.g49.t1 Flavonoid 4CL low borderline
ocimum_basilicum_1968.g112.t1 Flavonoid 4CL medium pass
ocimum_basilicum_1973.g86.t1 Flavonoid 4CL medium pass
ocimum_basilicum_362423.g2.t1 Flavonoid 4CL medium pass
ocimum_basilicum_363592.g1.t1 Flavonoid 4CL low borderline
ocimum_basilicum_366000.g1.t1 Flavonoid 4CL medium pass
ocimum_basilicum_369344.g1.t1 Flavonoid 4CL medium pass
ocimum_basilicum_369733.g1.t1 Flavonoid 4CL medium pass
ocimum_basilicum_375652.g2.t1 Flavonoid 4CL medium pass
ocimum_basilicum_376436.g2.t1 Flavonoid 4CL low borderline
ocimum_basilicum_377587.g14.t1 Flavonoid 4CL medium pass
ocimum_basilicum_377680.g3.t1 Flavonoid 4CL low borderline
ocimum_basilicum_379.g214.t1 Flavonoid 4CL medium pass
ocimum_basilicum_380212.g4.t1 Flavonoid 4CL medium pass
ocimum_basilicum_380446.g1.t1 Flavonoid 4CL medium pass
ocimum_basilicum_381158.g17.t1 Flavonoid 4CL low borderline
ocimum_basilicum_381165.g12.t1 Flavonoid 4CL medium pass
ocimum_basilicum_381165.g6.t1 Flavonoid 4CL medium pass
ocimum_basilicum_381423.g31.t1 Flavonoid 4CL low borderline
ocimum_basilicum_381562.g3.t1 Flavonoid 4CL medium pass
ocimum_basilicum_381562.g7.t1 Flavonoid 4CL medium pass
ocimum_basilicum_381562.g9.t1 Flavonoid 4CL medium pass
ocimum_basilicum_381679.g10.t1 Flavonoid 4CL medium pass
ocimum_basilicum_381732.g1.t1 Flavonoid 4CL low borderline
ocimum_basilicum_382093.g17.t1 Flavonoid 4CL medium pass
ocimum_basilicum_382178.g3.t1 Flavonoid 4CL low borderline
ocimum_basilicum_382284.g12.t1 Flavonoid 4CL medium pass
ocimum_basilicum_382708.g2.t1 Flavonoid 4CL medium pass
ocimum_basilicum_382708.g4.t1 Flavonoid 4CL medium pass
ocimum_basilicum_382708.g5.t1 Flavonoid 4CL medium pass
ocimum_basilicum_382779.g40.t1 Flavonoid 4CL low borderline
ocimum_basilicum_382794.g40.t1 Flavonoid 4CL medium pass