PlantSME Plant secondary metabolism enzyme database

Oryza coarctata (oryza_coarctata)

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Imported from atlas release summary for Oryza coarctata.

1287
Candidate Genes
103
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Common name
/
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (95)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 347 20 BAHD (149) View species results
Phenylpropanoid pathway 344 12 POD (178) View species results
Alkaloid pathway 254 19 NMT (49) View species results
Flavonoid pathway 150 14 UFGT (67) View species results
Rosmarinic acid pathway 110 7 C4H (40) View species results
Steroid pathway 82 10 CAS (35) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1166 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 261 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: C4H
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Gene Pathway Family Confidence Status
oryza_coarctata_PC_40779 Rosmarinic Acid C4H medium pass
oryza_coarctata_PC_41051 Rosmarinic Acid C4H low borderline
oryza_coarctata_PC_41876 Rosmarinic Acid C4H low borderline
oryza_coarctata_PC_41985 Rosmarinic Acid C4H low borderline
oryza_coarctata_PC_42745 Rosmarinic Acid C4H low borderline
oryza_coarctata_PC_43488 Rosmarinic Acid C4H low borderline
oryza_coarctata_PC_44132 Rosmarinic Acid C4H low borderline
oryza_coarctata_PC_44206 Rosmarinic Acid C4H low borderline
oryza_coarctata_PC_44208 Rosmarinic Acid C4H medium pass
oryza_coarctata_PC_44210 Rosmarinic Acid C4H medium pass
oryza_coarctata_PC_44758 Rosmarinic Acid C4H low borderline
oryza_coarctata_PC_44861 Rosmarinic Acid C4H medium pass
oryza_coarctata_PC_45219 Rosmarinic Acid C4H medium pass
oryza_coarctata_PC_45860 Rosmarinic Acid C4H low borderline
oryza_coarctata_PC_45865 Rosmarinic Acid C4H low borderline
oryza_coarctata_PC_46502 Rosmarinic Acid C4H low borderline
oryza_coarctata_PC_46651 Rosmarinic Acid C4H low borderline
oryza_coarctata_PC_47004 Rosmarinic Acid C4H low borderline
oryza_coarctata_PC_47512 Rosmarinic Acid C4H medium pass
oryza_coarctata_PC_47706 Rosmarinic Acid C4H low borderline
oryza_coarctata_PC_47708 Rosmarinic Acid C4H low borderline
oryza_coarctata_PC_47717 Rosmarinic Acid C4H low borderline
oryza_coarctata_PC_47718 Rosmarinic Acid C4H medium pass
oryza_coarctata_PC_47920 Rosmarinic Acid C4H low borderline
oryza_coarctata_PC_48031 Rosmarinic Acid C4H medium pass
oryza_coarctata_PC_48356 Rosmarinic Acid C4H low borderline
oryza_coarctata_PC_48620 Rosmarinic Acid C4H low borderline
oryza_coarctata_PC_48902 Rosmarinic Acid C4H low borderline
oryza_coarctata_PC_48926 Rosmarinic Acid C4H medium pass
oryza_coarctata_PC_49125 Rosmarinic Acid C4H low borderline
oryza_coarctata_PC_49188 Rosmarinic Acid C4H low borderline
oryza_coarctata_PC_49252 Rosmarinic Acid C4H medium pass
oryza_coarctata_PC_49654 Rosmarinic Acid C4H low borderline
oryza_coarctata_PC_50308 Rosmarinic Acid C4H medium pass
oryza_coarctata_PC_50311 Rosmarinic Acid C4H low borderline
oryza_coarctata_PC_50555 Rosmarinic Acid C4H low borderline