PlantSME Plant secondary metabolism enzyme database

Oryza coarctata (oryza_coarctata)

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Imported from atlas release summary for Oryza coarctata.

1287
Candidate Genes
103
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Common name
/
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (95)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 347 20 BAHD (149) View species results
Phenylpropanoid pathway 344 12 POD (178) View species results
Alkaloid pathway 254 19 NMT (49) View species results
Flavonoid pathway 150 14 UFGT (67) View species results
Rosmarinic acid pathway 110 7 C4H (40) View species results
Steroid pathway 82 10 CAS (35) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1166 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 261 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: CSE
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Gene Pathway Family Confidence Status Best Target
oryza_coarctata_PC_00003 Phenylpropanoid CSE medium pass CSE__00001__sp_P0DO76_4HBS_VANPL
oryza_coarctata_PC_00516 Phenylpropanoid CSE medium pass CSE__00001__sp_P0DO76_4HBS_VANPL
oryza_coarctata_PC_00526 Phenylpropanoid CSE medium pass CSE__00001__sp_P0DO76_4HBS_VANPL
oryza_coarctata_PC_02644 Phenylpropanoid CSE medium pass CSE__00001__sp_P0DO76_4HBS_VANPL
oryza_coarctata_PC_04236 Phenylpropanoid CSE medium pass CSE__00001__sp_P0DO76_4HBS_VANPL
oryza_coarctata_PC_04240 Phenylpropanoid CSE medium pass CSE__00001__sp_P0DO76_4HBS_VANPL
oryza_coarctata_PC_10113 Phenylpropanoid CSE medium pass CSE__00001__sp_P0DO76_4HBS_VANPL
oryza_coarctata_PC_10761 Phenylpropanoid CSE medium pass CSE__00001__sp_P0DO76_4HBS_VANPL
oryza_coarctata_PC_11457 Phenylpropanoid CSE medium pass CSE__00002__sp_Q9C942_CSE_ARATH
oryza_coarctata_PC_16003 Phenylpropanoid CSE low borderline CSE__00001__sp_P0DO76_4HBS_VANPL
oryza_coarctata_PC_22122 Phenylpropanoid CSE low borderline CSE__00001__sp_P0DO76_4HBS_VANPL
oryza_coarctata_PC_23169 Phenylpropanoid CSE medium pass CSE__00001__sp_P0DO76_4HBS_VANPL
oryza_coarctata_PC_24276 Phenylpropanoid CSE medium pass CSE__00001__sp_P0DO76_4HBS_VANPL
oryza_coarctata_PC_24912 Phenylpropanoid CSE medium pass CSE__00001__sp_P0DO76_4HBS_VANPL
oryza_coarctata_PC_25540 Phenylpropanoid CSE medium pass CSE__00001__sp_P0DO76_4HBS_VANPL
oryza_coarctata_PC_26554 Phenylpropanoid CSE medium pass CSE__00001__sp_P0DO76_4HBS_VANPL
oryza_coarctata_PC_30375 Phenylpropanoid CSE medium pass CSE__00002__sp_Q9C942_CSE_ARATH
oryza_coarctata_PC_32820 Phenylpropanoid CSE medium pass CSE__00001__sp_P0DO76_4HBS_VANPL
oryza_coarctata_PC_32832 Phenylpropanoid CSE medium pass CSE__00001__sp_P0DO76_4HBS_VANPL
oryza_coarctata_PC_34219 Phenylpropanoid CSE medium pass CSE__00001__sp_P0DO76_4HBS_VANPL
oryza_coarctata_PC_34224 Phenylpropanoid CSE medium pass CSE__00001__sp_P0DO76_4HBS_VANPL
oryza_coarctata_PC_35341 Phenylpropanoid CSE medium pass CSE__00001__sp_P0DO76_4HBS_VANPL
oryza_coarctata_PC_39705 Phenylpropanoid CSE medium pass CSE__00001__sp_P0DO76_4HBS_VANPL
oryza_coarctata_PC_39713 Phenylpropanoid CSE medium pass CSE__00001__sp_P0DO76_4HBS_VANPL
oryza_coarctata_PC_39813 Phenylpropanoid CSE medium pass CSE__00001__sp_P0DO76_4HBS_VANPL
oryza_coarctata_PC_45408 Phenylpropanoid CSE medium pass CSE__00001__sp_P0DO76_4HBS_VANPL
oryza_coarctata_PC_48237 Phenylpropanoid CSE medium pass CSE__00001__sp_P0DO76_4HBS_VANPL
oryza_coarctata_PC_48254 Phenylpropanoid CSE low borderline CSE__00001__sp_P0DO76_4HBS_VANPL