PlantSME Plant secondary metabolism enzyme database

Oryza coarctata (oryza_coarctata)

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Imported from atlas release summary for Oryza coarctata.

1287
Candidate Genes
103
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Site group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Current group 117
Eudicots
Site group 495
Species Metadata
Taxon group
Monocots
Common name
/
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
Terpenoid pathway 26.96% Phenylpropanoid pathway 26.73% Alkaloid pathway 19.74% Flavonoid pathway 11.66% Rosmarinic acid pathway 8.55% Steroid pathway 6.37%
Family Distribution
POD 6.41% BAHD 6.32% C4H 6.28% C3'H/CYP98A 5.54% 4CL 5.2% CYP76 3.47% UGT 3.19% 7DLGT 2.76%
Other Families 60.84%
More Families (95)
NMT 87 2.69% IFS 83 2.57% T3O 82 2.54% UFGT 81 2.51% F3'H/CYP75B 80 2.48% F3H 68 2.11% STR 65 2.01% DWF4/CYP90B1 60 1.86% BR6OX2/CYP85A2 55 1.7% SMT1/SMT2/SMT3 52 1.61% G8O/G8H 46 1.42% CYP71 45 1.39% H6H 41 1.27% CAS 41 1.27% CAD 38 1.18% LAC 35 1.08% SGD 34 1.05% T16H 31 0.96% CODM/T6ODM 31 0.96% TPS 31 0.96% COMT 29 0.9% RAS 29 0.9% SLS 28 0.87% PMT 28 0.87% IFR 28 0.87% CSE 28 0.87% HCT 28 0.87% CCR 28 0.87% PAL 27 0.84% GES 26 0.8% ANR 26 0.8% FNS 26 0.8% CYP90D1 26 0.8% TRI/TRII 25 0.77% 16OMT 22 0.68% GS 22 0.68% F3'5'H/CYP75A 22 0.68% PYKS 21 0.65% NCS 19 0.59% CYP51G1 19 0.59% BR6OX1/CYP85A1 18 0.56% F5H/CYP84A 17 0.53% 8HGO 15 0.46% IO 15 0.46% TAT 15 0.46% DFR 14 0.43% CPD/CYP90A1 14 0.43% CHS 13 0.4% 7DLH 12 0.37% BBE 12 0.37% CPR 12 0.37% CCoAOMT 11 0.34% AACT 10 0.31% COR 9 0.28% MPO 9 0.28% CNMT 9 0.28% XMT_MXMT_DXMT 9 0.28% FPPS 9 0.28% 6OMT_4OMT_SOMT 8 0.25% ANS/LDOX 8 0.25% MCT/IspD 8 0.25% CYP719 7 0.22% MVK 7 0.22% GGPPS 7 0.22% LAMT 6 0.19% SQS/FDFT1 6 0.19% HMGR 6 0.19% CYP80B1 5 0.15% HPPR 5 0.15% SMO1/SMO2 5 0.15% DXS 5 0.15% HMGS 5 0.15% CYP80F1 4 0.12% MDS/IspF 4 0.12% MVD 4 0.12% HDR/IspH 4 0.12% CMK/IspE 4 0.12% PMK 4 0.12% CHI 3 0.09% DWF7 3 0.09% DWF1 3 0.09% ROT3/CYP90C1 3 0.09% SQE 3 0.09% HDS/IspG 3 0.09% TYDC_DDC 2 0.06% ADC 2 0.06% TDC 2 0.06% FLS 2 0.06% DWF5 2 0.06% DET2 2 0.06% DXR 2 0.06% IDI 2 0.06% ODC 1 0.03% CPI1 1 0.03% HYD1 1 0.03%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 347 20 BAHD (149) View species results
Phenylpropanoid pathway 344 12 POD (178) View species results
Alkaloid pathway 254 19 NMT (49) View species results
Flavonoid pathway 150 14 UFGT (67) View species results
Rosmarinic acid pathway 110 7 C4H (40) View species results
Steroid pathway 82 10 CAS (35) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1166 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 261 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: FPPS
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Gene Pathway Family Confidence Status Best Target
oryza_coarctata_PC_00647 Terpenoid FPPS medium pass FPPS__00010__sp_Q7XYT0_FPPS2_ARTSI
oryza_coarctata_PC_05967 Terpenoid FPPS medium pass FPPS__00010__sp_Q7XYT0_FPPS2_ARTSI
oryza_coarctata_PC_16300 Terpenoid FPPS medium pass FPPS__00006__sp_P49350_FPPS_ARTAN
oryza_coarctata_PC_21543 Terpenoid FPPS low borderline FPPS__00008__sp_Q4JHN6_FPS_PANGI
oryza_coarctata_PC_29235 Terpenoid FPPS medium pass FPPS__00010__sp_Q7XYT0_FPPS2_ARTSI
oryza_coarctata_PC_31230 Terpenoid FPPS medium pass FPPS__00008__sp_Q4JHN6_FPS_PANGI
oryza_coarctata_PC_31632 Terpenoid FPPS medium pass FPPS__00010__sp_Q7XYT0_FPPS2_ARTSI
oryza_coarctata_PC_36862 Terpenoid FPPS medium pass FPPS__00002__sp_K7W9N9_CPT6_SOLLC
oryza_coarctata_PC_43887 Terpenoid FPPS medium pass FPPS__00002__sp_K7W9N9_CPT6_SOLLC