PlantSME Plant secondary metabolism enzyme database

Oryza coarctata (oryza_coarctata)

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Imported from atlas release summary for Oryza coarctata.

1287
Candidate Genes
103
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Common name
/
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (95)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 347 20 BAHD (149) View species results
Phenylpropanoid pathway 344 12 POD (178) View species results
Alkaloid pathway 254 19 NMT (49) View species results
Flavonoid pathway 150 14 UFGT (67) View species results
Rosmarinic acid pathway 110 7 C4H (40) View species results
Steroid pathway 82 10 CAS (35) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1166 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 261 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: CODM/T6ODM
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Gene Pathway Family Confidence Status
oryza_coarctata_PC_05426 Alkaloid CODM/T6ODM medium borderline
oryza_coarctata_PC_06960 Alkaloid CODM/T6ODM medium borderline
oryza_coarctata_PC_08246 Alkaloid CODM/T6ODM medium borderline
oryza_coarctata_PC_08647 Alkaloid CODM/T6ODM medium borderline
oryza_coarctata_PC_10218 Alkaloid CODM/T6ODM medium borderline
oryza_coarctata_PC_11650 Alkaloid CODM/T6ODM medium borderline
oryza_coarctata_PC_14599 Alkaloid CODM/T6ODM medium borderline
oryza_coarctata_PC_14695 Alkaloid CODM/T6ODM medium borderline
oryza_coarctata_PC_16633 Alkaloid CODM/T6ODM medium borderline
oryza_coarctata_PC_17239 Alkaloid CODM/T6ODM medium borderline
oryza_coarctata_PC_18437 Alkaloid CODM/T6ODM medium borderline
oryza_coarctata_PC_19436 Alkaloid CODM/T6ODM medium borderline
oryza_coarctata_PC_23453 Alkaloid CODM/T6ODM medium borderline
oryza_coarctata_PC_25409 Alkaloid CODM/T6ODM medium borderline
oryza_coarctata_PC_27031 Alkaloid CODM/T6ODM medium borderline
oryza_coarctata_PC_30196 Alkaloid CODM/T6ODM low borderline
oryza_coarctata_PC_30350 Alkaloid CODM/T6ODM medium borderline
oryza_coarctata_PC_30351 Alkaloid CODM/T6ODM medium borderline
oryza_coarctata_PC_32535 Alkaloid CODM/T6ODM medium borderline
oryza_coarctata_PC_35954 Alkaloid CODM/T6ODM medium borderline
oryza_coarctata_PC_36490 Alkaloid CODM/T6ODM medium borderline
oryza_coarctata_PC_36591 Alkaloid CODM/T6ODM medium borderline
oryza_coarctata_PC_37146 Alkaloid CODM/T6ODM medium borderline
oryza_coarctata_PC_37907 Alkaloid CODM/T6ODM medium borderline
oryza_coarctata_PC_40837 Alkaloid CODM/T6ODM medium borderline
oryza_coarctata_PC_40936 Alkaloid CODM/T6ODM medium borderline
oryza_coarctata_PC_46435 Alkaloid CODM/T6ODM medium borderline
oryza_coarctata_PC_48319 Alkaloid CODM/T6ODM medium borderline
oryza_coarctata_PC_49241 Alkaloid CODM/T6ODM medium borderline
oryza_coarctata_PC_49952 Alkaloid CODM/T6ODM medium borderline
oryza_coarctata_PC_50357 Alkaloid CODM/T6ODM medium borderline