Oryza coarctata (oryza_coarctata)
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Imported from atlas release summary for Oryza coarctata.
1287
Candidate Genes
103
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Common name
/
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
6
Pathways
Family Distribution
1287
Candidate Genes
POD
6.41%
BAHD
6.32%
C4H
6.28%
C3'H/CYP98A
5.54%
4CL
5.2%
CYP76
3.47%
UGT
3.19%
7DLGT
2.76%
Other Families
60.84%
More Families (95)
NMT
87
2.69%
IFS
83
2.57%
T3O
82
2.54%
UFGT
81
2.51%
F3'H/CYP75B
80
2.48%
F3H
68
2.11%
STR
65
2.01%
DWF4/CYP90B1
60
1.86%
BR6OX2/CYP85A2
55
1.7%
SMT1/SMT2/SMT3
52
1.61%
G8O/G8H
46
1.42%
CYP71
45
1.39%
H6H
41
1.27%
CAS
41
1.27%
CAD
38
1.18%
LAC
35
1.08%
SGD
34
1.05%
T16H
31
0.96%
CODM/T6ODM
31
0.96%
TPS
31
0.96%
COMT
29
0.9%
RAS
29
0.9%
SLS
28
0.87%
PMT
28
0.87%
IFR
28
0.87%
CSE
28
0.87%
HCT
28
0.87%
CCR
28
0.87%
PAL
27
0.84%
GES
26
0.8%
ANR
26
0.8%
FNS
26
0.8%
CYP90D1
26
0.8%
TRI/TRII
25
0.77%
16OMT
22
0.68%
GS
22
0.68%
F3'5'H/CYP75A
22
0.68%
PYKS
21
0.65%
NCS
19
0.59%
CYP51G1
19
0.59%
BR6OX1/CYP85A1
18
0.56%
F5H/CYP84A
17
0.53%
8HGO
15
0.46%
IO
15
0.46%
TAT
15
0.46%
DFR
14
0.43%
CPD/CYP90A1
14
0.43%
CHS
13
0.4%
7DLH
12
0.37%
BBE
12
0.37%
CPR
12
0.37%
CCoAOMT
11
0.34%
AACT
10
0.31%
COR
9
0.28%
MPO
9
0.28%
CNMT
9
0.28%
XMT_MXMT_DXMT
9
0.28%
FPPS
9
0.28%
6OMT_4OMT_SOMT
8
0.25%
ANS/LDOX
8
0.25%
MCT/IspD
8
0.25%
CYP719
7
0.22%
MVK
7
0.22%
GGPPS
7
0.22%
LAMT
6
0.19%
SQS/FDFT1
6
0.19%
HMGR
6
0.19%
CYP80B1
5
0.15%
HPPR
5
0.15%
SMO1/SMO2
5
0.15%
DXS
5
0.15%
HMGS
5
0.15%
CYP80F1
4
0.12%
MDS/IspF
4
0.12%
MVD
4
0.12%
HDR/IspH
4
0.12%
CMK/IspE
4
0.12%
PMK
4
0.12%
CHI
3
0.09%
DWF7
3
0.09%
DWF1
3
0.09%
ROT3/CYP90C1
3
0.09%
SQE
3
0.09%
HDS/IspG
3
0.09%
TYDC_DDC
2
0.06%
ADC
2
0.06%
TDC
2
0.06%
FLS
2
0.06%
DWF5
2
0.06%
DET2
2
0.06%
DXR
2
0.06%
IDI
2
0.06%
ODC
1
0.03%
CPI1
1
0.03%
HYD1
1
0.03%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Candidate Genes | Families | Top family | Results |
|---|---|---|---|---|
| Terpenoid pathway | 347 | 20 | BAHD (149) | View species results |
| Phenylpropanoid pathway | 344 | 12 | POD (178) | View species results |
| Alkaloid pathway | 254 | 19 | NMT (49) | View species results |
| Flavonoid pathway | 150 | 14 | UFGT (67) | View species results |
| Rosmarinic acid pathway | 110 | 7 | C4H (40) | View species results |
| Steroid pathway | 82 | 10 | CAS (35) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Families | Candidate genes | Included families |
|---|---|---|---|
| P450/oxygenase | 24 | 1166 | 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 3 | 261 | BAHD, HCT, RAS |
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: SGD
| Gene | Pathway | Family | Confidence | Status |
|---|---|---|---|---|
| oryza_coarctata_PC_02750 | Alkaloid | SGD | medium | pass |
| oryza_coarctata_PC_06521 | Alkaloid | SGD | medium | pass |
| oryza_coarctata_PC_07910 | Alkaloid | SGD | medium | pass |
| oryza_coarctata_PC_10021 | Alkaloid | SGD | medium | pass |
| oryza_coarctata_PC_10053 | Alkaloid | SGD | low | borderline |
| oryza_coarctata_PC_11204 | Alkaloid | SGD | medium | pass |
| oryza_coarctata_PC_15872 | Alkaloid | SGD | low | borderline |
| oryza_coarctata_PC_15873 | Alkaloid | SGD | medium | pass |
| oryza_coarctata_PC_15875 | Alkaloid | SGD | medium | pass |
| oryza_coarctata_PC_15878 | Alkaloid | SGD | low | borderline |
| oryza_coarctata_PC_16924 | Alkaloid | SGD | medium | pass |
| oryza_coarctata_PC_16925 | Alkaloid | SGD | medium | pass |
| oryza_coarctata_PC_21019 | Alkaloid | SGD | medium | pass |
| oryza_coarctata_PC_22938 | Alkaloid | SGD | medium | pass |
| oryza_coarctata_PC_22940 | Alkaloid | SGD | medium | pass |
| oryza_coarctata_PC_23539 | Alkaloid | SGD | medium | pass |
| oryza_coarctata_PC_29047 | Alkaloid | SGD | low | borderline |
| oryza_coarctata_PC_30161 | Alkaloid | SGD | medium | pass |
| oryza_coarctata_PC_30229 | Alkaloid | SGD | medium | pass |
| oryza_coarctata_PC_30233 | Alkaloid | SGD | low | borderline |
| oryza_coarctata_PC_30309 | Alkaloid | SGD | medium | pass |
| oryza_coarctata_PC_30312 | Alkaloid | SGD | medium | pass |
| oryza_coarctata_PC_31414 | Alkaloid | SGD | medium | pass |
| oryza_coarctata_PC_36948 | Alkaloid | SGD | medium | pass |
| oryza_coarctata_PC_42199 | Alkaloid | SGD | medium | pass |
| oryza_coarctata_PC_42200 | Alkaloid | SGD | medium | pass |
| oryza_coarctata_PC_42826 | Alkaloid | SGD | low | borderline |
| oryza_coarctata_PC_42827 | Alkaloid | SGD | medium | pass |
| oryza_coarctata_PC_42828 | Alkaloid | SGD | medium | pass |
| oryza_coarctata_PC_43356 | Alkaloid | SGD | medium | pass |
| oryza_coarctata_PC_43480 | Alkaloid | SGD | medium | pass |
| oryza_coarctata_PC_46702 | Alkaloid | SGD | medium | pass |
| oryza_coarctata_PC_48765 | Alkaloid | SGD | low | borderline |
| oryza_coarctata_PC_48896 | Alkaloid | SGD | low | borderline |