PlantSME Plant secondary metabolism enzyme database

Oryza coarctata (oryza_coarctata)

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Imported from atlas release summary for Oryza coarctata.

1287
Candidate Genes
103
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Common name
/
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (95)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 347 20 BAHD (149) View species results
Phenylpropanoid pathway 344 12 POD (178) View species results
Alkaloid pathway 254 19 NMT (49) View species results
Flavonoid pathway 150 14 UFGT (67) View species results
Rosmarinic acid pathway 110 7 C4H (40) View species results
Steroid pathway 82 10 CAS (35) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1166 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 261 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: GES
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Gene Pathway Family Confidence Status Best Target
oryza_coarctata_PC_00804 Alkaloid GES medium pass GES__00008__sp_Q84ZW8_ACSS_MAIZE
oryza_coarctata_PC_02771 Alkaloid GES medium pass GES__00001__sp_A0A7G5KLV3_TPS4_CANOD
oryza_coarctata_PC_06354 Alkaloid GES medium pass GES__00001__sp_A0A7G5KLV3_TPS4_CANOD
oryza_coarctata_PC_06674 Alkaloid GES low borderline GES__00009__sp_Q8GUE4_GERS_CINTE
oryza_coarctata_PC_08087 Alkaloid GES medium pass GES__00008__sp_Q84ZW8_ACSS_MAIZE
oryza_coarctata_PC_08906 Alkaloid GES low borderline GES__00010__sp_Q93YV0_GES_ARATH
oryza_coarctata_PC_12709 Alkaloid GES medium pass GES__00004__sp_E2E2N7_BCGS_ORIVU
oryza_coarctata_PC_16335 Alkaloid GES medium pass GES__00008__sp_Q84ZW8_ACSS_MAIZE
oryza_coarctata_PC_17668 Alkaloid GES low borderline GES__00002__sp_C0KWV4_GRNLG_PERFH
oryza_coarctata_PC_19356 Alkaloid GES low borderline GES__00010__sp_Q93YV0_GES_ARATH
oryza_coarctata_PC_22111 Alkaloid GES medium pass GES__00004__sp_E2E2N7_BCGS_ORIVU
oryza_coarctata_PC_22114 Alkaloid GES medium pass GES__00004__sp_E2E2N7_BCGS_ORIVU
oryza_coarctata_PC_22123 Alkaloid GES low borderline GES__00004__sp_E2E2N7_BCGS_ORIVU
oryza_coarctata_PC_26542 Alkaloid GES medium pass GES__00004__sp_E2E2N7_BCGS_ORIVU
oryza_coarctata_PC_26777 Alkaloid GES low borderline GES__00010__sp_Q93YV0_GES_ARATH
oryza_coarctata_PC_27802 Alkaloid GES low borderline GES__00011__sp_R9QMR5_ATERP_PINBN
oryza_coarctata_PC_30099 Alkaloid GES medium pass GES__00004__sp_E2E2N7_BCGS_ORIVU
oryza_coarctata_PC_40275 Alkaloid GES low borderline GES__00008__sp_Q84ZW8_ACSS_MAIZE
oryza_coarctata_PC_40276 Alkaloid GES medium pass GES__00008__sp_Q84ZW8_ACSS_MAIZE
oryza_coarctata_PC_40277 Alkaloid GES low borderline GES__00010__sp_Q93YV0_GES_ARATH
oryza_coarctata_PC_40285 Alkaloid GES medium pass GES__00008__sp_Q84ZW8_ACSS_MAIZE
oryza_coarctata_PC_41931 Alkaloid GES medium pass GES__00004__sp_E2E2N7_BCGS_ORIVU
oryza_coarctata_PC_44867 Alkaloid GES medium pass GES__00004__sp_E2E2N7_BCGS_ORIVU
oryza_coarctata_PC_47048 Alkaloid GES medium pass GES__00008__sp_Q84ZW8_ACSS_MAIZE
oryza_coarctata_PC_47050 Alkaloid GES medium pass GES__00008__sp_Q84ZW8_ACSS_MAIZE
oryza_coarctata_PC_47051 Alkaloid GES medium pass GES__00008__sp_Q84ZW8_ACSS_MAIZE