PlantSME Plant secondary metabolism enzyme database

Oryza coarctata (oryza_coarctata)

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Imported from atlas release summary for Oryza coarctata.

1287
Candidate Genes
103
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Common name
/
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (95)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 347 20 BAHD (149) View species results
Phenylpropanoid pathway 344 12 POD (178) View species results
Alkaloid pathway 254 19 NMT (49) View species results
Flavonoid pathway 150 14 UFGT (67) View species results
Rosmarinic acid pathway 110 7 C4H (40) View species results
Steroid pathway 82 10 CAS (35) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1166 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 261 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: CAD
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Gene Pathway Family Confidence Status Best Target
oryza_coarctata_PC_00005 Phenylpropanoid CAD low borderline CAD__00005__sp_G7IYC1_CAD2_MEDTR
oryza_coarctata_PC_00804 Phenylpropanoid CAD low borderline CAD__00006__sp_I1ZHA5_CAD_CHAFM
oryza_coarctata_PC_01880 Phenylpropanoid CAD low borderline CAD__00008__sp_O49482_CADH5_ARATH
oryza_coarctata_PC_06354 Phenylpropanoid CAD medium pass CAD__00006__sp_I1ZHA5_CAD_CHAFM
oryza_coarctata_PC_08087 Phenylpropanoid CAD low borderline CAD__00006__sp_I1ZHA5_CAD_CHAFM
oryza_coarctata_PC_12612 Phenylpropanoid CAD low borderline CAD__00011__sp_Q02971_CADH7_ARATH
oryza_coarctata_PC_13810 Phenylpropanoid CAD low borderline CAD__00005__sp_G7IYC1_CAD2_MEDTR
oryza_coarctata_PC_15150 Phenylpropanoid CAD medium borderline CAD__00005__sp_G7IYC1_CAD2_MEDTR
oryza_coarctata_PC_16335 Phenylpropanoid CAD low borderline CAD__00006__sp_I1ZHA5_CAD_CHAFM
oryza_coarctata_PC_17668 Phenylpropanoid CAD low borderline CAD__00006__sp_I1ZHA5_CAD_CHAFM
oryza_coarctata_PC_19039 Phenylpropanoid CAD low borderline CAD__00012__sp_Q02972_CADH8_ARATH
oryza_coarctata_PC_20499 Phenylpropanoid CAD medium borderline CAD__00005__sp_G7IYC1_CAD2_MEDTR
oryza_coarctata_PC_22111 Phenylpropanoid CAD medium pass CAD__00006__sp_I1ZHA5_CAD_CHAFM
oryza_coarctata_PC_22142 Phenylpropanoid CAD medium pass CAD__00009__sp_P42734_CADH9_ARATH
oryza_coarctata_PC_24130 Phenylpropanoid CAD medium pass CAD__00016__sp_Q9SJ10_CADH3_ARATH
oryza_coarctata_PC_24648 Phenylpropanoid CAD low borderline CAD__00011__sp_Q02971_CADH7_ARATH
oryza_coarctata_PC_25244 Phenylpropanoid CAD low borderline CAD__00011__sp_Q02971_CADH7_ARATH
oryza_coarctata_PC_25310 Phenylpropanoid CAD low borderline CAD__00011__sp_Q02971_CADH7_ARATH
oryza_coarctata_PC_26542 Phenylpropanoid CAD medium pass CAD__00006__sp_I1ZHA5_CAD_CHAFM
oryza_coarctata_PC_27802 Phenylpropanoid CAD low borderline CAD__00006__sp_I1ZHA5_CAD_CHAFM
oryza_coarctata_PC_29927 Phenylpropanoid CAD medium pass CAD__00016__sp_Q9SJ10_CADH3_ARATH
oryza_coarctata_PC_30099 Phenylpropanoid CAD medium pass CAD__00006__sp_I1ZHA5_CAD_CHAFM
oryza_coarctata_PC_30564 Phenylpropanoid CAD medium borderline CAD__00005__sp_G7IYC1_CAD2_MEDTR
oryza_coarctata_PC_32194 Phenylpropanoid CAD medium pass CAD__00015__sp_Q6ZHS4_CADH2_ORYSJ
oryza_coarctata_PC_32889 Phenylpropanoid CAD medium borderline CAD__00005__sp_G7IYC1_CAD2_MEDTR
oryza_coarctata_PC_35901 Phenylpropanoid CAD medium pass CAD__00011__sp_Q02971_CADH7_ARATH
oryza_coarctata_PC_40272 Phenylpropanoid CAD medium pass CAD__00013__sp_Q0JA75_CADH7_ORYSJ
oryza_coarctata_PC_41931 Phenylpropanoid CAD low borderline CAD__00006__sp_I1ZHA5_CAD_CHAFM
oryza_coarctata_PC_41951 Phenylpropanoid CAD medium pass CAD__00013__sp_Q0JA75_CADH7_ORYSJ
oryza_coarctata_PC_44867 Phenylpropanoid CAD low borderline CAD__00006__sp_I1ZHA5_CAD_CHAFM
oryza_coarctata_PC_45593 Phenylpropanoid CAD medium pass CAD__00013__sp_Q0JA75_CADH7_ORYSJ
oryza_coarctata_PC_45594 Phenylpropanoid CAD medium pass CAD__00013__sp_Q0JA75_CADH7_ORYSJ
oryza_coarctata_PC_46411 Phenylpropanoid CAD medium borderline CAD__00005__sp_G7IYC1_CAD2_MEDTR
oryza_coarctata_PC_46717 Phenylpropanoid CAD medium borderline CAD__00005__sp_G7IYC1_CAD2_MEDTR
oryza_coarctata_PC_47066 Phenylpropanoid CAD medium pass CAD__00013__sp_Q0JA75_CADH7_ORYSJ
oryza_coarctata_PC_47075 Phenylpropanoid CAD medium pass CAD__00013__sp_Q0JA75_CADH7_ORYSJ
oryza_coarctata_PC_47962 Phenylpropanoid CAD low borderline CAD__00011__sp_Q02971_CADH7_ARATH
oryza_coarctata_PC_48132 Phenylpropanoid CAD medium pass CAD__00016__sp_Q9SJ10_CADH3_ARATH