PlantSME Plant secondary metabolism enzyme database

Oryza coarctata (oryza_coarctata)

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Imported from atlas release summary for Oryza coarctata.

1694
Candidate Protein Records
1287
Pathway-Level Records
3230
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Site group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Current group 117
Eudicots
Site group 495
Species Metadata
Taxon group
Monocots
Common name
/
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Pathway Coverage
Terpenoid pathway 26.96% Phenylpropanoid pathway 26.73% Alkaloid pathway 19.74% Flavonoid pathway 11.66% Rosmarinic acid pathway 8.55% Steroid pathway 6.37%
Family Distribution
POD 6.41% BAHD 6.32% C4H 6.28% C3'H/CYP98A 5.54% 4CL 5.2% CYP76 3.47% UGT 3.19% 7DLGT 2.76%
Other Families 60.84%
More Families (95)
NMT 87 2.69% IFS 83 2.57% T3O 82 2.54% UFGT 81 2.51% F3'H/CYP75B 80 2.48% F3H 68 2.11% STR 65 2.01% DWF4/CYP90B1 60 1.86% BR6OX2/CYP85A2 55 1.7% SMT1/SMT2/SMT3 52 1.61% G8O/G8H 46 1.42% CYP71 45 1.39% H6H 41 1.27% CAS 41 1.27% CAD 38 1.18% LAC 35 1.08% SGD 34 1.05% T16H 31 0.96% CODM/T6ODM 31 0.96% TPS 31 0.96% COMT 29 0.9% RAS 29 0.9% SLS 28 0.87% PMT 28 0.87% IFR 28 0.87% CSE 28 0.87% HCT 28 0.87% CCR 28 0.87% PAL 27 0.84% GES 26 0.8% ANR 26 0.8% FNS 26 0.8% CYP90D1 26 0.8% TRI/TRII 25 0.77% 16OMT 22 0.68% GS 22 0.68% F3'5'H/CYP75A 22 0.68% PYKS 21 0.65% NCS 19 0.59% CYP51G1 19 0.59% BR6OX1/CYP85A1 18 0.56% F5H/CYP84A 17 0.53% 8HGO 15 0.46% IO 15 0.46% TAT 15 0.46% DFR 14 0.43% CPD/CYP90A1 14 0.43% CHS 13 0.4% 7DLH 12 0.37% BBE 12 0.37% CPR 12 0.37% CCoAOMT 11 0.34% AACT 10 0.31% COR 9 0.28% MPO 9 0.28% CNMT 9 0.28% XMT_MXMT_DXMT 9 0.28% FPPS 9 0.28% 6OMT_4OMT_SOMT 8 0.25% ANS/LDOX 8 0.25% MCT/IspD 8 0.25% CYP719 7 0.22% MVK 7 0.22% GGPPS 7 0.22% LAMT 6 0.19% SQS/FDFT1 6 0.19% HMGR 6 0.19% CYP80B1 5 0.15% HPPR 5 0.15% SMO1/SMO2 5 0.15% DXS 5 0.15% HMGS 5 0.15% CYP80F1 4 0.12% MDS/IspF 4 0.12% MVD 4 0.12% HDR/IspH 4 0.12% CMK/IspE 4 0.12% PMK 4 0.12% CHI 3 0.09% DWF7 3 0.09% DWF1 3 0.09% ROT3/CYP90C1 3 0.09% SQE 3 0.09% HDS/IspG 3 0.09% TYDC_DDC 2 0.06% ADC 2 0.06% TDC 2 0.06% FLS 2 0.06% DWF5 2 0.06% DET2 2 0.06% DXR 2 0.06% IDI 2 0.06% ODC 1 0.03% CPI1 1 0.03% HYD1 1 0.03%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 347 20 BAHD (149) View species results
Phenylpropanoid pathway 344 12 POD (178) View species results
Alkaloid pathway 254 19 NMT (49) View species results
Flavonoid pathway 150 14 UFGT (67) View species results
Rosmarinic acid pathway 110 7 C4H (40) View species results
Steroid pathway 82 10 CAS (35) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 24 1166 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 261 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: SMT1/SMT2/SMT3
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Protein/Isoform Record Pathway Family Confidence Status Best Target
oryza_coarctata_PC_47899 Steroid SMT1/SMT2/SMT3 medium pass SMT1_SMT2_SMT3__00005__sp_Q8RUW5_SCP8_ARATH
oryza_coarctata_PC_50191 Steroid SMT1/SMT2/SMT3 low borderline SMT1_SMT2_SMT3__00005__sp_Q8RUW5_SCP8_ARATH