PlantSME Plant secondary metabolism enzyme database

Oryza coarctata (oryza_coarctata)

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Imported from atlas release summary for Oryza coarctata.

1287
Candidate Genes
103
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Common name
/
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (95)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 347 20 BAHD (149) View species results
Phenylpropanoid pathway 344 12 POD (178) View species results
Alkaloid pathway 254 19 NMT (49) View species results
Flavonoid pathway 150 14 UFGT (67) View species results
Rosmarinic acid pathway 110 7 C4H (40) View species results
Steroid pathway 82 10 CAS (35) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1166 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 261 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Flavonoid pathway
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Gene Pathway Family Confidence Status
oryza_coarctata_PC_48360 Flavonoid 4CL medium pass
oryza_coarctata_PC_48367 Flavonoid 4CL low borderline
oryza_coarctata_PC_48727 Flavonoid 4CL medium pass
oryza_coarctata_PC_48873 Flavonoid 4CL medium pass
oryza_coarctata_PC_48874 Flavonoid 4CL medium pass
oryza_coarctata_PC_48875 Flavonoid 4CL medium pass
oryza_coarctata_PC_02168 Flavonoid ANR low borderline
oryza_coarctata_PC_03401 Flavonoid ANR medium borderline
oryza_coarctata_PC_03402 Flavonoid ANR medium borderline
oryza_coarctata_PC_05347 Flavonoid ANR medium borderline
oryza_coarctata_PC_07642 Flavonoid ANR medium borderline
oryza_coarctata_PC_15149 Flavonoid ANR low borderline
oryza_coarctata_PC_17789 Flavonoid ANR medium borderline
oryza_coarctata_PC_17790 Flavonoid ANR medium pass
oryza_coarctata_PC_20499 Flavonoid ANR medium borderline
oryza_coarctata_PC_23094 Flavonoid ANR medium borderline
oryza_coarctata_PC_30564 Flavonoid ANR medium borderline
oryza_coarctata_PC_32023 Flavonoid ANR low borderline
oryza_coarctata_PC_32889 Flavonoid ANR medium borderline
oryza_coarctata_PC_36737 Flavonoid ANR medium borderline
oryza_coarctata_PC_37617 Flavonoid ANR medium borderline
oryza_coarctata_PC_38041 Flavonoid ANR medium borderline
oryza_coarctata_PC_38042 Flavonoid ANR medium borderline
oryza_coarctata_PC_39315 Flavonoid ANR low borderline
oryza_coarctata_PC_39428 Flavonoid ANR low borderline
oryza_coarctata_PC_39883 Flavonoid ANR medium pass
oryza_coarctata_PC_42013 Flavonoid ANR low borderline
oryza_coarctata_PC_46410 Flavonoid ANR medium borderline
oryza_coarctata_PC_46411 Flavonoid ANR low borderline
oryza_coarctata_PC_46717 Flavonoid ANR medium borderline
oryza_coarctata_PC_46720 Flavonoid ANR medium pass
oryza_coarctata_PC_48722 Flavonoid ANR medium borderline
oryza_coarctata_PC_08430 Flavonoid ANS/LDOX low borderline
oryza_coarctata_PC_14080 Flavonoid ANS/LDOX medium borderline
oryza_coarctata_PC_16538 Flavonoid ANS/LDOX low borderline
oryza_coarctata_PC_17239 Flavonoid ANS/LDOX medium borderline
oryza_coarctata_PC_21844 Flavonoid ANS/LDOX medium borderline
oryza_coarctata_PC_28400 Flavonoid ANS/LDOX medium borderline
oryza_coarctata_PC_29714 Flavonoid ANS/LDOX medium borderline
oryza_coarctata_PC_49151 Flavonoid ANS/LDOX medium pass
oryza_coarctata_PC_09071 Flavonoid C4H medium borderline
oryza_coarctata_PC_10264 Flavonoid C4H low borderline
oryza_coarctata_PC_19843 Flavonoid C4H low borderline
oryza_coarctata_PC_20777 Flavonoid C4H low borderline
oryza_coarctata_PC_27817 Flavonoid C4H low borderline
oryza_coarctata_PC_30119 Flavonoid C4H medium borderline
oryza_coarctata_PC_40779 Flavonoid C4H medium borderline
oryza_coarctata_PC_44206 Flavonoid C4H low borderline
oryza_coarctata_PC_44208 Flavonoid C4H medium borderline
oryza_coarctata_PC_45219 Flavonoid C4H medium borderline