PlantSME Plant secondary metabolism enzyme database

Oryza longistaminata (oryza_longistaminata)

Imported from atlas release summary for Oryza longistaminata.

1740
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 461 19 BAHD (151) View species results
Alkaloid pathway 386 24 7DLGT (74) View species results
Phenylpropanoid pathway 383 13 POD (164) View species results
Flavonoid pathway 221 13 UFGT (108) View species results
Rosmarinic acid pathway 180 7 C4H (110) View species results
Steroid pathway 109 14 SMT1/SMT2/SMT3 (45) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1898 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 267 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: PYKS
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Gene Pathway Family Confidence Status
AMDW01024172.1_FGP001 Alkaloid PYKS medium pass
AMDW01024381.1_FGP001 Alkaloid PYKS medium pass
AMDW01030365.1_FGP001 Alkaloid PYKS high pass
AMDW01033029.1_FGP001 Alkaloid PYKS medium pass
AMDW01064998.1_FGP001 Alkaloid PYKS medium pass
KN538691.1_FGP050 Alkaloid PYKS low borderline
KN538724.1_FGP001 Alkaloid PYKS low borderline
KN538769.1_FGP034 Alkaloid PYKS low borderline
KN538816.1_FGP003 Alkaloid PYKS medium pass
KN538816.1_FGP014 Alkaloid PYKS low borderline
KN538872.1_FGP031 Alkaloid PYKS low borderline
KN538912.1_FGP015 Alkaloid PYKS low borderline
KN539120.1_FGP002 Alkaloid PYKS low borderline
KN539120.1_FGP005 Alkaloid PYKS high pass
KN539120.1_FGP007 Alkaloid PYKS high pass
KN539120.1_FGP011 Alkaloid PYKS medium pass
KN539138.1_FGP006 Alkaloid PYKS low borderline
KN539172.1_FGP006 Alkaloid PYKS high pass
KN539173.1_FGP014 Alkaloid PYKS low borderline
KN539201.1_FGP008 Alkaloid PYKS high pass
KN539521.1_FGP016 Alkaloid PYKS low borderline
KN539539.1_FGP002 Alkaloid PYKS low borderline
KN539539.1_FGP003 Alkaloid PYKS low borderline
KN539539.1_FGP005 Alkaloid PYKS low borderline
KN539544.1_FGP003 Alkaloid PYKS medium pass
KN539704.1_FGP002 Alkaloid PYKS low borderline
KN539744.1_FGP001 Alkaloid PYKS low borderline
KN539744.1_FGP003 Alkaloid PYKS low borderline
KN539744.1_FGP005 Alkaloid PYKS low borderline
KN539744.1_FGP006 Alkaloid PYKS low borderline
KN539834.1_FGP005 Alkaloid PYKS high pass
KN539868.1_FGP005 Alkaloid PYKS low borderline
KN540024.1_FGP001 Alkaloid PYKS high pass
KN540024.1_FGP003 Alkaloid PYKS high pass
KN540024.1_FGP006 Alkaloid PYKS high pass
KN540027.1_FGP001 Alkaloid PYKS medium pass
KN540066.1_FGP004 Alkaloid PYKS high pass
KN540118.1_FGP003 Alkaloid PYKS high pass
KN540118.1_FGP004 Alkaloid PYKS low borderline
KN540173.1_FGP002 Alkaloid PYKS high pass
KN540203.1_FGP006 Alkaloid PYKS low borderline
KN540557.1_FGP002 Alkaloid PYKS high pass
KN540557.1_FGP004 Alkaloid PYKS high pass
KN540742.1_FGP005 Alkaloid PYKS medium pass
KN540865.1_FGP001 Alkaloid PYKS high pass
KN540914.1_FGP001 Alkaloid PYKS high pass
KN541081.1_FGP002 Alkaloid PYKS low borderline
KN541165.1_FGP003 Alkaloid PYKS low borderline
KN541250.1_FGP001 Alkaloid PYKS low borderline
KN541507.1_FGP001 Alkaloid PYKS high pass