PlantSME Plant secondary metabolism enzyme database

Oryza longistaminata (oryza_longistaminata)

Imported from atlas release summary for Oryza longistaminata.

1740
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 461 19 BAHD (151) View species results
Alkaloid pathway 386 24 7DLGT (74) View species results
Phenylpropanoid pathway 383 13 POD (164) View species results
Flavonoid pathway 221 13 UFGT (108) View species results
Rosmarinic acid pathway 180 7 C4H (110) View species results
Steroid pathway 109 14 SMT1/SMT2/SMT3 (45) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1898 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 267 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Alkaloid pathway
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Gene Pathway Family Confidence Status
KN538768.1_FGP053 Alkaloid CYP719 medium borderline
KN538854.1_FGP007 Alkaloid CYP719 medium borderline
KN538900.1_FGP001 Alkaloid CYP719 medium borderline
KN540042.1_FGP003 Alkaloid CYP719 medium borderline
KN540281.1_FGP001 Alkaloid CYP719 medium borderline
KN538765.1_FGP014 Alkaloid CYP80B1 medium borderline
KN539333.1_FGP002 Alkaloid CYP80B1 low borderline
KN539439.1_FGP003 Alkaloid CYP80B1 medium borderline
KN539439.1_FGP006 Alkaloid CYP80B1 medium borderline
KN539794.1_FGP006 Alkaloid CYP80B1 medium borderline
KN540281.1_FGP003 Alkaloid CYP80B1 medium borderline
KN540296.1_FGP002 Alkaloid CYP80B1 medium borderline
KN540825.1_FGP001 Alkaloid CYP80B1 low borderline
KN541059.1_FGP002 Alkaloid CYP80B1 medium borderline
KN541672.1_FGP001 Alkaloid CYP80B1 medium borderline
AMDW01013204.1_FGP001 Alkaloid CYP80F1 medium borderline
KN538684.1_FGP105 Alkaloid CYP80F1 medium borderline
KN538900.1_FGP017 Alkaloid CYP80F1 medium borderline
KN539610.1_FGP006 Alkaloid CYP80F1 medium borderline
KN540182.1_FGP004 Alkaloid CYP80F1 medium borderline
KN540273.1_FGP004 Alkaloid CYP80F1 medium borderline
AMDW01003424.1_FGP001 Alkaloid G8O/G8H medium pass
AMDW01012590.1_FGP001 Alkaloid G8O/G8H low borderline
AMDW01037912.1_FGP001 Alkaloid G8O/G8H medium borderline
AMDW01038535.1_FGP001 Alkaloid G8O/G8H medium borderline
AMDW01040110.1_FGP001 Alkaloid G8O/G8H medium borderline
KN538682.1_FGP222 Alkaloid G8O/G8H medium borderline
KN538699.1_FGP075 Alkaloid G8O/G8H low borderline
KN538716.1_FGP037 Alkaloid G8O/G8H medium borderline
KN538723.1_FGP013 Alkaloid G8O/G8H medium borderline
KN538749.1_FGP012 Alkaloid G8O/G8H medium borderline
KN538817.1_FGP037 Alkaloid G8O/G8H medium borderline
KN538850.1_FGP023 Alkaloid G8O/G8H medium borderline
KN538900.1_FGP011 Alkaloid G8O/G8H medium borderline
KN538900.1_FGP015 Alkaloid G8O/G8H medium borderline
KN538902.1_FGP009 Alkaloid G8O/G8H medium borderline
KN538982.1_FGP010 Alkaloid G8O/G8H medium pass
KN539116.1_FGP015 Alkaloid G8O/G8H low borderline
KN539170.1_FGP007 Alkaloid G8O/G8H low borderline
KN539228.1_FGP010 Alkaloid G8O/G8H medium borderline
KN539306.1_FGP009 Alkaloid G8O/G8H medium borderline
KN539315.1_FGP009 Alkaloid G8O/G8H low borderline
KN539400.1_FGP010 Alkaloid G8O/G8H medium borderline
KN539474.1_FGP007 Alkaloid G8O/G8H medium borderline
KN539498.1_FGP010 Alkaloid G8O/G8H low borderline
KN539596.1_FGP005 Alkaloid G8O/G8H medium borderline
KN539727.1_FGP002 Alkaloid G8O/G8H medium borderline
KN540204.1_FGP001 Alkaloid G8O/G8H medium borderline
KN540265.1_FGP006 Alkaloid G8O/G8H medium borderline
KN540271.1_FGP003 Alkaloid G8O/G8H medium borderline