PlantSME Plant secondary metabolism enzyme database

Panicum virgatum (panicum_virgatum)

Imported from atlas release summary for Panicum virgatum.

6488
Candidate Protein Records
5617
Pathway-Level Records
12778
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Family Distribution
More Families (98)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 1471 20 BAHD (546) View species results
Alkaloid pathway 1354 25 7DLGT (243) View species results
Phenylpropanoid pathway 1185 11 POD (599) View species results
Flavonoid pathway 712 13 UFGT (422) View species results
Rosmarinic acid pathway 466 7 C4H (205) View species results
Steroid pathway 429 12 CAS (177) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 24 4263 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 994 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Alkaloid pathway
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Protein/Isoform Record Pathway Family Confidence Status
Pvir01KG0018760.4 Alkaloid GES medium pass
Pvir01KG0025040.1 Alkaloid GES low borderline
Pvir01KG0025070.1 Alkaloid GES low borderline
Pvir01KG0025100.1 Alkaloid GES low borderline
Pvir01KG0025100.2 Alkaloid GES low borderline
Pvir01KG0026440.1 Alkaloid GES medium pass
Pvir01NG0001660.1 Alkaloid GES medium pass
Pvir01NG0001710.1 Alkaloid GES medium pass
Pvir01NG0017720.1 Alkaloid GES medium pass
Pvir01NG0017720.2 Alkaloid GES medium pass
Pvir01NG0017720.3 Alkaloid GES medium pass
Pvir01NG0017720.4 Alkaloid GES medium pass
Pvir01NG0020210.1 Alkaloid GES medium pass
Pvir01NG0021270.1 Alkaloid GES low borderline
Pvir01NG0022770.1 Alkaloid GES low borderline
Pvir01NG0024350.1 Alkaloid GES low borderline
Pvir01NG0024420.1 Alkaloid GES low borderline
Pvir02KG0006470.1 Alkaloid GES medium pass
Pvir02KG0006470.2 Alkaloid GES medium pass
Pvir02KG0006530.1 Alkaloid GES medium pass
Pvir02KG0011750.1 Alkaloid GES medium pass
Pvir02KG0011750.2 Alkaloid GES medium pass
Pvir02KG0011800.1 Alkaloid GES medium pass
Pvir02KG0011810.1 Alkaloid GES low borderline
Pvir02NG0009970.1 Alkaloid GES medium pass
Pvir02NG0009970.2 Alkaloid GES low borderline
Pvir02NG0009970.3 Alkaloid GES medium pass
Pvir02NG0009980.1 Alkaloid GES medium pass
Pvir02NG0009990.1 Alkaloid GES low borderline
Pvir02NG0010050.1 Alkaloid GES low borderline
Pvir02NG0010050.2 Alkaloid GES low borderline
Pvir02NG0010050.3 Alkaloid GES low borderline
Pvir02NG0010050.4 Alkaloid GES low borderline
Pvir02NG0010060.1 Alkaloid GES medium pass
Pvir02NG0020570.1 Alkaloid GES medium pass
Pvir02NG0020570.2 Alkaloid GES medium pass
Pvir03KG0009100.1 Alkaloid GES medium pass
Pvir03KG0009100.2 Alkaloid GES medium pass
Pvir03KG0009120.1 Alkaloid GES medium pass
Pvir03KG0009120.2 Alkaloid GES medium pass
Pvir03KG0039700.1 Alkaloid GES low borderline
Pvir03KG0040180.1 Alkaloid GES low borderline
Pvir03KG0040410.1 Alkaloid GES medium pass
Pvir03KG0040420.1 Alkaloid GES medium pass
Pvir03KG0044140.1 Alkaloid GES medium pass
Pvir03KG0044150.1 Alkaloid GES medium pass
Pvir03KG0044200.1 Alkaloid GES low borderline
Pvir03NG0008200.1 Alkaloid GES medium pass
Pvir03NG0008200.2 Alkaloid GES medium pass
Pvir03NG0008200.3 Alkaloid GES medium pass