Plagiochila semidecurrens (plagiochila_semidecurrens)

This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Download candidate protein FASTA for this species

Pathway Coverage

6 Pathways

Phenylpropanoid pathway 27.53% Terpenoid pathway 24.74% Alkaloid pathway 19.33% Flavonoid pathway 12.45% Rosmarinic acid pathway 10.54% Steroid pathway 5.42%

Family Distribution

1791 Family-Level Calls

C4H 6.37% BAHD 5.86% C3'H/CYP98A 5.19% POD 5.03% CYP76 4.97% 4CL 4.86% NMT 3.41% IFS 3.02%

Other Families 61.31%

More Families (93)

UGT 53 2.96% STR 52 2.9% 7DLGT 48 2.68% UFGT 47 2.62% DWF4/CYP90B1 40 2.23% BR6OX2/CYP85A2 39 2.18% IFR 37 2.07% T3O 36 2.01% F3H 34 1.9% F3'H/CYP75B 31 1.73% TRI/TRII 30 1.68% GS 30 1.68% PAL 27 1.51% H6H 25 1.4% G8O/G8H 23 1.28% HCT 22 1.23% COMT 22 1.23% CAD 21 1.17% SMT1/SMT2/SMT3 21 1.17% LAMT 19 1.06% IO 19 1.06% RAS 17 0.95% ANR 15 0.84% CSE 15 0.84% 8HGO 14 0.78% CNMT 14 0.78% T16H 14 0.78% LAC 14 0.78% SGD 13 0.73% FNS 13 0.73% COR 11 0.61% F3'5'H/CYP75A 11 0.61% PYKS 10 0.56% CYP80B1 10 0.56% CCR 10 0.56% CPD/CYP90A1 10 0.56% PMT 9 0.5% CAS 9 0.5% BR6OX1/CYP85A1 9 0.5% AACT 9 0.5% CYP719 8 0.45% 16OMT 8 0.45% NCS 7 0.39% CODM/T6ODM 7 0.39% CCoAOMT 7 0.39% F5H/CYP84A 7 0.39% TPS 7 0.39% SLS 6 0.34% TAT 6 0.34% CYP71 6 0.34% MVK 6 0.34% BBE 5 0.28% CHS 5 0.28% CPR 5 0.28% DWF5 5 0.28% ISY 4 0.22% CYP80F1 4 0.22% MPO 4 0.22% DFR 4 0.22% HPPR 4 0.22% CYP90D1 4 0.22% PMK 4 0.22% DXS 4 0.22% CMK/IspE 4 0.22% MCT/IspD 4 0.22% TDC 3 0.17% XMT_MXMT_DXMT 3 0.17% ADC 3 0.17% 7DLH 3 0.17% CHI 3 0.17% ANS/LDOX 3 0.17% DWF7 3 0.17% SMO1/SMO2 3 0.17% DET2 3 0.17% SQS/FDFT1 3 0.17% HMGR 3 0.17% HDS/IspG 3 0.17% GGPPS 3 0.17% SQE 2 0.11% ROT3/CYP90C1 2 0.11% FK 2 0.11% DWF1 2 0.11% MVD 2 0.11% MDS/IspF 2 0.11% GES 1 0.06% 6OMT_4OMT_SOMT 1 0.06% CPI1 1 0.06% HYD1 1 0.06% CYP51G1 1 0.06% FPPS 1 0.06% IDI 1 0.06% DXR 1 0.06% HMGS 1 0.06%

Species Pathway Results

The links below show identification results for this species within each pathway, instead of opening the global pathway overview.

Pathway	Pathway-Level Records	Detected Families	Top family	Results
Phenylpropanoid pathway	188	12	POD (84)	View species results
Terpenoid pathway	169	17	BAHD (62)	View species results
Alkaloid pathway	132	18	NMT (21)	View species results
Flavonoid pathway	85	10	UFGT (42)	View species results
Rosmarinic acid pathway	72	7	C4H (35)	View species results
Steroid pathway	37	13	CAS (9)	View species results

Broad Catalytic Groups

P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.

Catalytic group	Detected families	Assignment calls	Included families
P450/oxygenase	24	633	7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase	3	144	BAHD, HCT, RAS

Identification Result List

Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.

Current family filter: CYP76

Protein/Isoform Record	Pathway	Family	Confidence	Status	Best Target
Psem1580009400	Terpenoid	CYP76	medium	pass	CYP76__00013__sp_D1MI46_C76BA_SWEMU
Psem2610014490	Terpenoid	CYP76	medium	borderline	CYP76__00013__sp_D1MI46_C76BA_SWEMU
Psem3120033560	Terpenoid	CYP76	medium	borderline	CYP76__00025__sp_W8JIS5_IO_CATRO
Psem3120033570	Terpenoid	CYP76	medium	borderline	CYP76__00025__sp_W8JIS5_IO_CATRO
Psem3455700050420	Terpenoid	CYP76	low	borderline	CYP76__00009__sp_A0A1Z3GBS4_CYPH3_ISORU
Psem3455700050430	Terpenoid	CYP76	medium	pass	CYP76__00012__sp_A0AA51VJB7_C7694_LOPWI
Psem3560530057750	Terpenoid	CYP76	medium	pass	CYP76__00022__sp_Q8VWZ7_C76B6_CATRO
Psem3644430060550	Terpenoid	CYP76	low	borderline	CYP76__00010__sp_A0A2K9RG08_CYBK1_VITAC
Psem3786210063960	Terpenoid	CYP76	low	borderline	CYP76__00022__sp_Q8VWZ7_C76B6_CATRO
Psem3816170069020	Terpenoid	CYP76	medium	pass	CYP76__00013__sp_D1MI46_C76BA_SWEMU
Psem3859390073750	Terpenoid	CYP76	medium	borderline	CYP76__00022__sp_Q8VWZ7_C76B6_CATRO
Psem3948770085190	Terpenoid	CYP76	medium	pass	CYP76__00006__sp_A0A1D8QMD1_C76K6_SALFT
Psem3959470089070	Terpenoid	CYP76	medium	pass	CYP76__00025__sp_W8JIS5_IO_CATRO
Psem3972580091470	Terpenoid	CYP76	low	borderline	CYP76__00025__sp_W8JIS5_IO_CATRO
Psem4036980097200	Terpenoid	CYP76	medium	pass	CYP76__00002__sp_A0A0C5QRZ2_C76H2_SALFT
Psem4079200107020	Terpenoid	CYP76	medium	pass	CYP76__00010__sp_A0A2K9RG08_CYBK1_VITAC
Psem4081430107630	Terpenoid	CYP76	medium	borderline	CYP76__00025__sp_W8JIS5_IO_CATRO
Psem4104810113210	Terpenoid	CYP76	medium	pass	CYP76__00010__sp_A0A2K9RG08_CYBK1_VITAC
Psem4109070115530	Terpenoid	CYP76	medium	pass	CYP76__00012__sp_A0AA51VJB7_C7694_LOPWI
Psem4140880119370	Terpenoid	CYP76	medium	pass	CYP76__00012__sp_A0AA51VJB7_C7694_LOPWI
Psem4174680121690	Terpenoid	CYP76	medium	pass	CYP76__00016__sp_P0DXJ6_C7631_LOPWI
Psem4194570123970	Terpenoid	CYP76	medium	pass	CYP76__00011__sp_A0A3Q9R4N5_C76B7_ARNEU
Psem4194840124020	Terpenoid	CYP76	medium	pass	CYP76__00009__sp_A0A1Z3GBS4_CYPH3_ISORU
Psem4200200125030	Terpenoid	CYP76	low	borderline	CYP76__00013__sp_D1MI46_C76BA_SWEMU
Psem4253270132470	Terpenoid	CYP76	medium	borderline	CYP76__00025__sp_W8JIS5_IO_CATRO
Psem4258290133310	Terpenoid	CYP76	medium	borderline	CYP76__00025__sp_W8JIS5_IO_CATRO
Psem4272920136610	Terpenoid	CYP76	medium	pass	CYP76__00022__sp_Q8VWZ7_C76B6_CATRO
Psem4273850136830	Terpenoid	CYP76	low	borderline	CYP76__00023__sp_S4UX02_CYPH1_SALMI
Psem4277360137360	Terpenoid	CYP76	low	borderline	CYP76__00015__sp_P0DKI2_C76AN_BETVU
Psem4290260140470	Terpenoid	CYP76	medium	borderline	CYP76__00010__sp_A0A2K9RG08_CYBK1_VITAC
Psem4290260140490	Terpenoid	CYP76	medium	borderline	CYP76__00010__sp_A0A2K9RG08_CYBK1_VITAC
Psem4326870151210	Terpenoid	CYP76	medium	borderline	CYP76__00025__sp_W8JIS5_IO_CATRO
Psem4333710153770	Terpenoid	CYP76	low	borderline	CYP76__00012__sp_A0AA51VJB7_C7694_LOPWI
Psem4342520157570	Terpenoid	CYP76	low	borderline	CYP76__00010__sp_A0A2K9RG08_CYBK1_VITAC
Psem4343160157830	Terpenoid	CYP76	medium	borderline	CYP76__00010__sp_A0A2K9RG08_CYBK1_VITAC
Psem4343350157950	Terpenoid	CYP76	medium	pass	CYP76__00025__sp_W8JIS5_IO_CATRO
Psem4353420163290	Terpenoid	CYP76	medium	borderline	CYP76__00025__sp_W8JIS5_IO_CATRO
Psem4354510163940	Terpenoid	CYP76	medium	pass	CYP76__00010__sp_A0A2K9RG08_CYBK1_VITAC
Psem4371280172330	Terpenoid	CYP76	medium	borderline	CYP76__00010__sp_A0A2K9RG08_CYBK1_VITAC
Psem4371910172860	Terpenoid	CYP76	medium	pass	CYP76__00013__sp_D1MI46_C76BA_SWEMU
Psem4373580174090	Terpenoid	CYP76	low	borderline	CYP76__00011__sp_A0A3Q9R4N5_C76B7_ARNEU
Psem4375740175540	Terpenoid	CYP76	low	borderline	CYP76__00010__sp_A0A2K9RG08_CYBK1_VITAC
Psem4380080178410	Terpenoid	CYP76	low	borderline	CYP76__00022__sp_Q8VWZ7_C76B6_CATRO
Psem4386250182270	Terpenoid	CYP76	medium	borderline	CYP76__00025__sp_W8JIS5_IO_CATRO
Psem4387250183160	Terpenoid	CYP76	low	borderline	CYP76__00012__sp_A0AA51VJB7_C7694_LOPWI
Psem4393680187680	Terpenoid	CYP76	medium	pass	CYP76__00025__sp_W8JIS5_IO_CATRO
Psem4394820188760	Terpenoid	CYP76	medium	borderline	CYP76__00010__sp_A0A2K9RG08_CYBK1_VITAC
Psem4399480192810	Terpenoid	CYP76	low	borderline	CYP76__00010__sp_A0A2K9RG08_CYBK1_VITAC
Psem4400410193540	Terpenoid	CYP76	medium	pass	CYP76__00011__sp_A0A3Q9R4N5_C76B7_ARNEU
Psem4407100199240	Terpenoid	CYP76	medium	pass	CYP76__00012__sp_A0AA51VJB7_C7694_LOPWI