PlantSME Plant secondary metabolism enzyme database

Plagiochila semidecurrens (plagiochila_semidecurrens)

Imported from atlas release summary for Plagiochila semidecurrens.

962
Candidate Protein Records
683
Pathway-Level Records
1791
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Bryophytes
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Family Distribution
More Families (93)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Phenylpropanoid pathway 188 12 POD (84) View species results
Terpenoid pathway 169 17 BAHD (62) View species results
Alkaloid pathway 132 18 NMT (21) View species results
Flavonoid pathway 85 10 UFGT (42) View species results
Rosmarinic acid pathway 72 7 C4H (35) View species results
Steroid pathway 37 13 CAS (9) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 24 633 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 144 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Terpenoid pathway
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Protein/Isoform Record Pathway Family Confidence Status
Psem4552780278550 Terpenoid CYP76 low borderline
Psem4552810278570 Terpenoid CYP76 low borderline
Psem4656680282310 Terpenoid CYP76 medium pass
Psem4712990293530 Terpenoid CYP76 low borderline
Psem4713000293560 Terpenoid CYP76 low borderline
Psem4723260296290 Terpenoid CYP76 medium pass
Psem4723270296310 Terpenoid CYP76 medium pass
Psem4730296350 Terpenoid CYP76 medium borderline
Psem5020297120 Terpenoid CYP76 low borderline
Psem6710303680 Terpenoid CYP76 medium pass
Psem7520306210 Terpenoid CYP76 medium borderline
Psem7580306490 Terpenoid CYP76 medium pass
Psem8770311270 Terpenoid CYP76 medium borderline
Psem4432090225350 Terpenoid DXR high pass
Psem2560013540 Terpenoid DXS medium pass
Psem4266240134960 Terpenoid DXS low borderline
Psem4380060178360 Terpenoid DXS medium pass
Psem8080308800 Terpenoid DXS low borderline
Psem1670009680 Terpenoid FPPS medium pass
Psem4396980190870 Terpenoid GGPPS medium borderline
Psem4440950236320 Terpenoid GGPPS medium borderline
Psem4451910251880 Terpenoid GGPPS medium borderline
Psem4324990150610 Terpenoid HDS/IspG medium pass
Psem4362380167900 Terpenoid HDS/IspG high pass
Psem4394980188950 Terpenoid HDS/IspG medium pass
Psem2480012730 Terpenoid HMGR low borderline
Psem4453730254670 Terpenoid HMGR medium pass
Psem5130297430 Terpenoid HMGR low borderline
Psem4464260269430 Terpenoid HMGS high pass
Psem1820010260 Terpenoid IDI low borderline
Psem4274200136960 Terpenoid MCT/IspD high pass
Psem4394480188490 Terpenoid MCT/IspD medium pass
Psem4405710198250 Terpenoid MCT/IspD low borderline
Psem4462280266300 Terpenoid MCT/IspD low borderline
Psem4359420166500 Terpenoid MDS/IspF high pass
Psem4447690245610 Terpenoid MDS/IspF low borderline
Psem4349030160780 Terpenoid MVD low borderline
Psem4431520224680 Terpenoid MVD medium pass
Psem4428020220800 Terpenoid MVK low borderline
Psem4456740258520 Terpenoid MVK low borderline
Psem4463920268900 Terpenoid MVK medium pass
Psem4688400286900 Terpenoid MVK low borderline
Psem4688410286910 Terpenoid MVK low borderline
Psem6520302920 Terpenoid MVK low borderline
Psem1160006880 Terpenoid PMK medium pass
Psem4274580137030 Terpenoid PMK medium pass
Psem4327000151350 Terpenoid PMK medium pass
Psem4411800203970 Terpenoid PMK low borderline
Psem4353150163190 Terpenoid TPS medium pass
Psem4354510163920 Terpenoid TPS low borderline