Rhodiola crenulata (rhodiola_crenulata)
Imported from atlas release summary for Rhodiola crenulata.
1104
Candidate Genes
104
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
6
Pathways
Family Distribution
1104
Candidate Genes
BAHD
6.41%
C4H
5.84%
C3'H/CYP98A
5.84%
POD
5.06%
4CL
4.57%
IFS
3.93%
CYP76
3.5%
T3O
3.19%
Other Families
61.66%
More Families (96)
F3H
89
3.15%
UGT
86
3.04%
UFGT
76
2.69%
7DLGT
75
2.65%
NMT
71
2.51%
STR
56
1.98%
F3'H/CYP75B
55
1.95%
BR6OX2/CYP85A2
55
1.95%
CODM/T6ODM
53
1.88%
SMT1/SMT2/SMT3
50
1.77%
DWF4/CYP90B1
48
1.7%
H6H
45
1.59%
CSE
43
1.52%
CYP71
42
1.49%
CAS
36
1.27%
IFR
35
1.24%
LAC
35
1.24%
PYKS
33
1.17%
TRI/TRII
33
1.17%
SLS
28
0.99%
CAD
26
0.92%
CYP90D1
25
0.88%
CCR
24
0.85%
SGD
23
0.81%
T16H
23
0.81%
FNS
20
0.71%
IO
19
0.67%
7DLH
19
0.67%
GS
19
0.67%
G8O/G8H
18
0.64%
PAL
18
0.64%
RAS
17
0.6%
ANR
16
0.57%
NCS
15
0.53%
TAT
14
0.5%
CPD/CYP90A1
14
0.5%
BR6OX1/CYP85A1
14
0.5%
TPS
14
0.5%
BBE
13
0.46%
GES
13
0.46%
CNMT
13
0.46%
PMT
13
0.46%
F3'5'H/CYP75A
13
0.46%
F5H/CYP84A
13
0.46%
COMT
13
0.46%
COR
12
0.42%
DFR
12
0.42%
ANS/LDOX
12
0.42%
HCT
12
0.42%
CYP51G1
12
0.42%
SQE
11
0.39%
MVK
11
0.39%
ROT3/CYP90C1
10
0.35%
8HGO
9
0.32%
CPR
9
0.32%
DET2
9
0.32%
HMGR
9
0.32%
FPPS
9
0.32%
16OMT
8
0.28%
GGPPS
8
0.28%
HPPR
7
0.25%
TYDC_DDC
6
0.21%
CYP80B1
6
0.21%
CHS
6
0.21%
CCoAOMT
6
0.21%
SQS/FDFT1
6
0.21%
AACT
6
0.21%
LAMT
5
0.18%
DXS
5
0.18%
CYP80F1
4
0.14%
CYP719
4
0.14%
FK
4
0.14%
SMO1/SMO2
4
0.14%
IDI
4
0.14%
MPO
3
0.11%
ISY
3
0.11%
CHI
3
0.11%
MCT/IspD
3
0.11%
DXR
3
0.11%
PMK
3
0.11%
MVD
3
0.11%
TDC
2
0.07%
ADC
2
0.07%
FLS
2
0.07%
DWF5
2
0.07%
DWF1
2
0.07%
HMGS
2
0.07%
HDR/IspH
2
0.07%
XMT_MXMT_DXMT
1
0.04%
DWF7
1
0.04%
CPI1
1
0.04%
HYD1
1
0.04%
HDS/IspG
1
0.04%
CMK/IspE
1
0.04%
GPPS
1
0.04%
MDS/IspF
1
0.04%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Candidate Genes | Families | Top family | Results |
|---|---|---|---|---|
| Terpenoid pathway | 310 | 20 | BAHD (138) | View species results |
| Phenylpropanoid pathway | 275 | 11 | POD (128) | View species results |
| Alkaloid pathway | 201 | 19 | NMT (36) | View species results |
| Flavonoid pathway | 137 | 11 | UFGT (69) | View species results |
| Rosmarinic acid pathway | 95 | 7 | C4H (36) | View species results |
| Steroid pathway | 86 | 10 | CAS (32) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Families | Candidate genes | Included families |
|---|---|---|---|
| P450/oxygenase | 24 | 1052 | 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 3 | 210 | BAHD, HCT, RAS |
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: STR
| Gene | Pathway | Family | Confidence | Status | Best Target |
|---|---|---|---|---|---|
| Rcrescaffold106160004540 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Rcrescaffold108270006150 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| Rcrescaffold118630012330 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Rcrescaffold1266330016390 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Rcrescaffold1327640026030 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Rcrescaffold1351010032620 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Rcrescaffold1357560036220 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Rcrescaffold1358900038590 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| Rcrescaffold1358900038840 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Rcrescaffold1373740045010 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Rcrescaffold1382710053940 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Rcrescaffold1382840055400 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Rcrescaffold1382870055850 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Rcrescaffold1384180062490 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Rcrescaffold1384340064890 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Rcrescaffold1384490067430 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| Rcrescaffold1384870074780 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| Rcrescaffold1384870075020 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Rcrescaffold1384870075030 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Rcrescaffold1385030078530 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Rcrescaffold1385320083100 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| Rcrescaffold138550084810 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Rcrescaffold1385620085800 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Rcrescaffold1385620085890 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Rcrescaffold1386070090570 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Rcrescaffold1386120091080 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| Rcrescaffold1387120099670 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Rcrescaffold1387400103380 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Rcrescaffold1390090121530 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| Rcrescaffold1392270150300 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Rcrescaffold1394010159920 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Rcrescaffold1394380163290 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Rcrescaffold1394690166220 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| Rcrescaffold1395220169100 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| Rcrescaffold14780178970 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Rcrescaffold14780178980 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Rcrescaffold15050180100 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Rcrescaffold1720187650 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Rcrescaffold181550193020 | Alkaloid | STR | low | borderline | STR__00002__sp_P68175_STSY_RAUSE |
| Rcrescaffold18840196390 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| Rcrescaffold2190207260 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Rcrescaffold234030213690 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| Rcrescaffold246540217110 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Rcrescaffold257900219530 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Rcrescaffold299610230920 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| Rcrescaffold310840235250 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| Rcrescaffold4130254290 | Alkaloid | STR | medium | pass | STR__00002__sp_P68175_STSY_RAUSE |
| Rcrescaffold41590254520 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Rcrescaffold46120260420 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Rcrescaffold5120266330 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |