Rhodiola crenulata (rhodiola_crenulata)

This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.

Pathway Coverage

6 Pathways

Terpenoid pathway 28.08% Phenylpropanoid pathway 24.91% Alkaloid pathway 18.21% Flavonoid pathway 12.41% Rosmarinic acid pathway 8.61% Steroid pathway 7.79%

Family Distribution

1104 Candidate Genes

BAHD 6.41% C4H 5.84% C3'H/CYP98A 5.84% POD 5.06% 4CL 4.57% IFS 3.93% CYP76 3.5% T3O 3.19%

Other Families 61.66%

More Families (96)

F3H 89 3.15% UGT 86 3.04% UFGT 76 2.69% 7DLGT 75 2.65% NMT 71 2.51% STR 56 1.98% F3'H/CYP75B 55 1.95% BR6OX2/CYP85A2 55 1.95% CODM/T6ODM 53 1.88% SMT1/SMT2/SMT3 50 1.77% DWF4/CYP90B1 48 1.7% H6H 45 1.59% CSE 43 1.52% CYP71 42 1.49% CAS 36 1.27% IFR 35 1.24% LAC 35 1.24% PYKS 33 1.17% TRI/TRII 33 1.17% SLS 28 0.99% CAD 26 0.92% CYP90D1 25 0.88% CCR 24 0.85% SGD 23 0.81% T16H 23 0.81% FNS 20 0.71% IO 19 0.67% 7DLH 19 0.67% GS 19 0.67% G8O/G8H 18 0.64% PAL 18 0.64% RAS 17 0.6% ANR 16 0.57% NCS 15 0.53% TAT 14 0.5% CPD/CYP90A1 14 0.5% BR6OX1/CYP85A1 14 0.5% TPS 14 0.5% BBE 13 0.46% GES 13 0.46% CNMT 13 0.46% PMT 13 0.46% F3'5'H/CYP75A 13 0.46% F5H/CYP84A 13 0.46% COMT 13 0.46% COR 12 0.42% DFR 12 0.42% ANS/LDOX 12 0.42% HCT 12 0.42% CYP51G1 12 0.42% SQE 11 0.39% MVK 11 0.39% ROT3/CYP90C1 10 0.35% 8HGO 9 0.32% CPR 9 0.32% DET2 9 0.32% HMGR 9 0.32% FPPS 9 0.32% 16OMT 8 0.28% GGPPS 8 0.28% HPPR 7 0.25% TYDC_DDC 6 0.21% CYP80B1 6 0.21% CHS 6 0.21% CCoAOMT 6 0.21% SQS/FDFT1 6 0.21% AACT 6 0.21% LAMT 5 0.18% DXS 5 0.18% CYP80F1 4 0.14% CYP719 4 0.14% FK 4 0.14% SMO1/SMO2 4 0.14% IDI 4 0.14% MPO 3 0.11% ISY 3 0.11% CHI 3 0.11% MCT/IspD 3 0.11% DXR 3 0.11% PMK 3 0.11% MVD 3 0.11% TDC 2 0.07% ADC 2 0.07% FLS 2 0.07% DWF5 2 0.07% DWF1 2 0.07% HMGS 2 0.07% HDR/IspH 2 0.07% XMT_MXMT_DXMT 1 0.04% DWF7 1 0.04% CPI1 1 0.04% HYD1 1 0.04% HDS/IspG 1 0.04% CMK/IspE 1 0.04% GPPS 1 0.04% MDS/IspF 1 0.04%

Species Pathway Results

The links below show identification results for this species within each pathway, instead of opening the global pathway overview.

Pathway	Candidate Genes	Families	Top family	Results
Terpenoid pathway	310	20	BAHD (138)	View species results
Phenylpropanoid pathway	275	11	POD (128)	View species results
Alkaloid pathway	201	19	NMT (36)	View species results
Flavonoid pathway	137	11	UFGT (69)	View species results
Rosmarinic acid pathway	95	7	C4H (36)	View species results
Steroid pathway	86	10	CAS (32)	View species results

Broad Catalytic Groups

P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.

Catalytic group	Families	Candidate genes	Included families
P450/oxygenase	24	1052	7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase	3	210	BAHD, HCT, RAS

Identification Result List

Search the public identification results for this species; click pathway or family legends above to narrow within this species.

Current pathway filter: Terpenoid pathway

Gene	Pathway	Family	Confidence	Status	Best Target
Rcrescaffold1395310169580	Terpenoid	BAHD	low	borderline	BAHD__00039__sp_Q3ZPN4_ACMAT_VITLA
Rcrescaffold1395340169900	Terpenoid	BAHD	low	borderline	BAHD__00055__sp_Q8H780_SCP13_ARATH
Rcrescaffold1395560171840	Terpenoid	BAHD	medium	pass	BAHD__00009__sp_A0A4P1QUJ3_TTHAT_LUPAN
Rcrescaffold1395960173590	Terpenoid	BAHD	medium	pass	BAHD__00047__sp_Q5KS41_WSD11_ARATH
Rcrescaffold14350177110	Terpenoid	BAHD	medium	pass	BAHD__00058__sp_Q8LG50_LPAT2_ARATH
Rcrescaffold162460184680	Terpenoid	BAHD	medium	pass	BAHD__00012__sp_A1XWY7_CFAT_PETHY
Rcrescaffold179260192130	Terpenoid	BAHD	medium	pass	BAHD__00073__sp_Q9FF86_DCR_ARATH
Rcrescaffold181550193000	Terpenoid	BAHD	low	borderline	BAHD__00051__sp_Q7XA86_ZDH11_ARATH
Rcrescaffold182890193800	Terpenoid	BAHD	medium	pass	BAHD__00017__sp_F4IDU4_MBOA1_ARATH
Rcrescaffold18840196540	Terpenoid	BAHD	medium	pass	BAHD__00089__sp_Q9SB58_ZDH19_ARATH
Rcrescaffold208720202450	Terpenoid	BAHD	low	borderline	BAHD__00055__sp_Q8H780_SCP13_ARATH
Rcrescaffold208720202550	Terpenoid	BAHD	low	borderline	BAHD__00026__sp_O64811_SCP9_ARATH
Rcrescaffold21640204690	Terpenoid	BAHD	medium	pass	BAHD__00055__sp_Q8H780_SCP13_ARATH
Rcrescaffold217190206090	Terpenoid	BAHD	medium	pass	BAHD__00047__sp_Q5KS41_WSD11_ARATH
Rcrescaffold2190208000	Terpenoid	BAHD	medium	pass	BAHD__00012__sp_A1XWY7_CFAT_PETHY
Rcrescaffold2190208080	Terpenoid	BAHD	medium	pass	BAHD__00071__sp_Q9CAY3_GPAT5_ARATH
Rcrescaffold219450208230	Terpenoid	BAHD	medium	pass	BAHD__00090__sp_Q9SHJ5_GPAT1_ARATH
Rcrescaffold22710210490	Terpenoid	BAHD	low	borderline	BAHD__00026__sp_O64811_SCP9_ARATH
Rcrescaffold22860212280	Terpenoid	BAHD	medium	pass	BAHD__00055__sp_Q8H780_SCP13_ARATH
Rcrescaffold234030213140	Terpenoid	BAHD	medium	pass	BAHD__00015__sp_D2Y3X2_PUN1_CAPAN
Rcrescaffold234030213220	Terpenoid	BAHD	medium	pass	BAHD__00057__sp_Q8L7R3_LPCT1_ARATH
Rcrescaffold234030213370	Terpenoid	BAHD	low	borderline	BAHD__00001__sp_A0A068BGA5_AT1_ACTDE
Rcrescaffold237050214680	Terpenoid	BAHD	medium	pass	BAHD__00055__sp_Q8H780_SCP13_ARATH
Rcrescaffold237050214690	Terpenoid	BAHD	medium	pass	BAHD__00026__sp_O64811_SCP9_ARATH
Rcrescaffold24050215670	Terpenoid	BAHD	medium	pass	BAHD__00026__sp_O64811_SCP9_ARATH
Rcrescaffold24140215810	Terpenoid	BAHD	low	borderline	BAHD__00026__sp_O64811_SCP9_ARATH
Rcrescaffold24420216300	Terpenoid	BAHD	medium	pass	BAHD__00096__sp_Q9XGY6_WAXS1_SIMCH
Rcrescaffold24640216860	Terpenoid	BAHD	low	borderline	BAHD__00055__sp_Q8H780_SCP13_ARATH
Rcrescaffold24640216870	Terpenoid	BAHD	low	borderline	BAHD__00055__sp_Q8H780_SCP13_ARATH
Rcrescaffold24850218050	Terpenoid	BAHD	low	borderline	BAHD__00026__sp_O64811_SCP9_ARATH
Rcrescaffold257900219410	Terpenoid	BAHD	medium	pass	BAHD__00012__sp_A1XWY7_CFAT_PETHY
Rcrescaffold27620225070	Terpenoid	BAHD	medium	pass	BAHD__00050__sp_Q6DR03_ZDHC3_ARATH
Rcrescaffold280225950	Terpenoid	BAHD	medium	pass	BAHD__00055__sp_Q8H780_SCP13_ARATH
Rcrescaffold280225960	Terpenoid	BAHD	medium	pass	BAHD__00055__sp_Q8H780_SCP13_ARATH
Rcrescaffold28030226210	Terpenoid	BAHD	low	borderline	BAHD__00010__sp_A0AAW1LG41_BAHD1_SAPOF
Rcrescaffold2930228250	Terpenoid	BAHD	medium	pass	BAHD__00074__sp_Q9FFQ7_FACT_ARATH
Rcrescaffold2930228260	Terpenoid	BAHD	medium	pass	BAHD__00074__sp_Q9FFQ7_FACT_ARATH
Rcrescaffold29910230790	Terpenoid	BAHD	low	borderline	BAHD__00059__sp_Q8S8S2_LPCT2_ARATH
Rcrescaffold303610232610	Terpenoid	BAHD	medium	pass	BAHD__00081__sp_Q9LJB4_5MAT_ARATH
Rcrescaffold309020234800	Terpenoid	BAHD	medium	pass	BAHD__00016__sp_D4NUX0_HCT1_ACTRA
Rcrescaffold31450235550	Terpenoid	BAHD	medium	pass	BAHD__00016__sp_D4NUX0_HCT1_ACTRA
Rcrescaffold322250237280	Terpenoid	BAHD	medium	pass	BAHD__00060__sp_Q8VYP5_ZDH14_ARATH
Rcrescaffold334020239670	Terpenoid	BAHD	medium	pass	BAHD__00016__sp_D4NUX0_HCT1_ACTRA
Rcrescaffold334980239800	Terpenoid	BAHD	medium	pass	BAHD__00009__sp_A0A4P1QUJ3_TTHAT_LUPAN
Rcrescaffold35300242400	Terpenoid	BAHD	medium	pass	BAHD__00051__sp_Q7XA86_ZDH11_ARATH
Rcrescaffold36090243620	Terpenoid	BAHD	medium	pass	BAHD__00021__sp_K7K424_DAT2D_SOYBN
Rcrescaffold36090243640	Terpenoid	BAHD	medium	pass	BAHD__00011__sp_A1A442_DGAT2_RICCO
Rcrescaffold36770246590	Terpenoid	BAHD	low	borderline	BAHD__00047__sp_Q5KS41_WSD11_ARATH
Rcrescaffold380860249490	Terpenoid	BAHD	low	borderline	BAHD__00025__sp_O64810_SCP10_ARATH
Rcrescaffold39120251310	Terpenoid	BAHD	medium	pass	BAHD__00093__sp_Q9SV07_ASAT1_ARATH