Rhodiola crenulata (rhodiola_crenulata)
Imported from atlas release summary for Rhodiola crenulata.
1486
Candidate Protein Records
1104
Pathway-Level Records
2825
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
- Download candidate protein FASTA for this species
Pathway Coverage
6
Pathways
Family Distribution
2825
Family-Level Calls
BAHD
6.41%
C4H
5.84%
C3'H/CYP98A
5.84%
POD
5.06%
4CL
4.57%
IFS
3.93%
CYP76
3.5%
T3O
3.19%
Other Families
61.66%
More Families (96)
F3H
89
3.15%
UGT
86
3.04%
UFGT
76
2.69%
7DLGT
75
2.65%
NMT
71
2.51%
STR
56
1.98%
F3'H/CYP75B
55
1.95%
BR6OX2/CYP85A2
55
1.95%
CODM/T6ODM
53
1.88%
SMT1/SMT2/SMT3
50
1.77%
DWF4/CYP90B1
48
1.7%
H6H
45
1.59%
CSE
43
1.52%
CYP71
42
1.49%
CAS
36
1.27%
IFR
35
1.24%
LAC
35
1.24%
PYKS
33
1.17%
TRI/TRII
33
1.17%
SLS
28
0.99%
CAD
26
0.92%
CYP90D1
25
0.88%
CCR
24
0.85%
SGD
23
0.81%
T16H
23
0.81%
FNS
20
0.71%
IO
19
0.67%
7DLH
19
0.67%
GS
19
0.67%
G8O/G8H
18
0.64%
PAL
18
0.64%
RAS
17
0.6%
ANR
16
0.57%
NCS
15
0.53%
TAT
14
0.5%
CPD/CYP90A1
14
0.5%
BR6OX1/CYP85A1
14
0.5%
TPS
14
0.5%
BBE
13
0.46%
GES
13
0.46%
CNMT
13
0.46%
PMT
13
0.46%
F3'5'H/CYP75A
13
0.46%
F5H/CYP84A
13
0.46%
COMT
13
0.46%
COR
12
0.42%
DFR
12
0.42%
ANS/LDOX
12
0.42%
HCT
12
0.42%
CYP51G1
12
0.42%
SQE
11
0.39%
MVK
11
0.39%
ROT3/CYP90C1
10
0.35%
8HGO
9
0.32%
CPR
9
0.32%
DET2
9
0.32%
HMGR
9
0.32%
FPPS
9
0.32%
16OMT
8
0.28%
GGPPS
8
0.28%
HPPR
7
0.25%
TYDC_DDC
6
0.21%
CYP80B1
6
0.21%
CHS
6
0.21%
CCoAOMT
6
0.21%
SQS/FDFT1
6
0.21%
AACT
6
0.21%
LAMT
5
0.18%
DXS
5
0.18%
CYP80F1
4
0.14%
CYP719
4
0.14%
FK
4
0.14%
SMO1/SMO2
4
0.14%
IDI
4
0.14%
MPO
3
0.11%
ISY
3
0.11%
CHI
3
0.11%
MCT/IspD
3
0.11%
DXR
3
0.11%
PMK
3
0.11%
MVD
3
0.11%
TDC
2
0.07%
ADC
2
0.07%
FLS
2
0.07%
DWF5
2
0.07%
DWF1
2
0.07%
HMGS
2
0.07%
HDR/IspH
2
0.07%
XMT_MXMT_DXMT
1
0.04%
DWF7
1
0.04%
CPI1
1
0.04%
HYD1
1
0.04%
HDS/IspG
1
0.04%
CMK/IspE
1
0.04%
GPPS
1
0.04%
MDS/IspF
1
0.04%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Pathway-Level Records | Detected Families | Top family | Results |
|---|---|---|---|---|
| Terpenoid pathway | 310 | 20 | BAHD (138) | View species results |
| Phenylpropanoid pathway | 275 | 11 | POD (128) | View species results |
| Alkaloid pathway | 201 | 19 | NMT (36) | View species results |
| Flavonoid pathway | 137 | 11 | UFGT (69) | View species results |
| Rosmarinic acid pathway | 95 | 7 | C4H (36) | View species results |
| Steroid pathway | 86 | 10 | CAS (32) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Detected families | Assignment calls | Included families |
|---|---|---|---|
| P450/oxygenase | 24 | 1052 | 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 3 | 210 | BAHD, HCT, RAS |
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
| Protein/Isoform Record | Pathway | Family | Confidence | Status |
|---|---|---|---|---|
| Rcrescaffold64580285460 | Terpenoid | CYP76 | low | borderline |
| Rcrescaffold64580285470 | Terpenoid | CYP76 | low | borderline |
| Rcrescaffold68020289860 | Terpenoid | CYP76 | low | borderline |
| Rcrescaffold69080292130 | Terpenoid | CYP76 | medium | borderline |
| Rcrescaffold75350296450 | Terpenoid | CYP76 | medium | borderline |
| Rcrescaffold80680302560 | Terpenoid | CYP76 | medium | pass |
| Rcrescaffold83070304030 | Terpenoid | CYP76 | medium | pass |
| Rcrescaffold87360307510 | Terpenoid | CYP76 | medium | borderline |
| Rcrescaffold89750309950 | Terpenoid | CYP76 | low | borderline |
| Rcrescaffold99320314970 | Terpenoid | CYP76 | medium | pass |
| Rcrescaffold120640013210 | Terpenoid | DXR | high | pass |
| Rcrescaffold1392240150050 | Terpenoid | DXR | high | pass |
| Rcrescaffold285990227140 | Terpenoid | DXR | high | pass |
| Rcrescaffold1351010032680 | Terpenoid | DXS | medium | pass |
| Rcrescaffold1384580068850 | Terpenoid | DXS | medium | pass |
| Rcrescaffold1394050160310 | Terpenoid | DXS | medium | pass |
| Rcrescaffold21750206550 | Terpenoid | DXS | medium | pass |
| Rcrescaffold224600210140 | Terpenoid | DXS | medium | pass |
| Rcrescaffold1385030078280 | Terpenoid | FPPS | medium | pass |
| Rcrescaffold1385030078290 | Terpenoid | FPPS | medium | pass |
| Rcrescaffold1390140122480 | Terpenoid | FPPS | medium | borderline |
| Rcrescaffold1391670144550 | Terpenoid | FPPS | medium | pass |
| Rcrescaffold1394970167480 | Terpenoid | FPPS | medium | pass |
| Rcrescaffold1395120168310 | Terpenoid | FPPS | medium | pass |
| Rcrescaffold18840196170 | Terpenoid | FPPS | medium | pass |
| Rcrescaffold235080214120 | Terpenoid | FPPS | medium | pass |
| Rcrescaffold7700298480 | Terpenoid | FPPS | medium | borderline |
| Rcrescaffold1230400014480 | Terpenoid | GGPPS | medium | borderline |
| Rcrescaffold1346910030000 | Terpenoid | GGPPS | medium | borderline |
| Rcrescaffold1384920076320 | Terpenoid | GGPPS | medium | borderline |
| Rcrescaffold1386720096500 | Terpenoid | GGPPS | medium | borderline |
| Rcrescaffold1387080099180 | Terpenoid | GGPPS | medium | borderline |
| Rcrescaffold1391550141660 | Terpenoid | GGPPS | medium | borderline |
| Rcrescaffold45350259270 | Terpenoid | GGPPS | medium | borderline |
| Rcrescaffold56790272760 | Terpenoid | GGPPS | medium | borderline |
| Rcrescaffold171710187200 | Terpenoid | GPPS | medium | borderline |
| Rcrescaffold1383280058210 | Terpenoid | HDR/IspH | high | pass |
| Rcrescaffold558540271030 | Terpenoid | HDR/IspH | low | borderline |
| Rcrescaffold1390940131530 | Terpenoid | HDS/IspG | high | pass |
| Rcrescaffold1376270046690 | Terpenoid | HMGR | medium | pass |
| Rcrescaffold1386580095040 | Terpenoid | HMGR | medium | pass |
| Rcrescaffold1391550141570 | Terpenoid | HMGR | medium | pass |
| Rcrescaffold1421880176000 | Terpenoid | HMGR | medium | pass |
| Rcrescaffold199740200070 | Terpenoid | HMGR | medium | pass |
| Rcrescaffold45350259510 | Terpenoid | HMGR | medium | pass |
| Rcrescaffold532420268100 | Terpenoid | HMGR | medium | pass |
| Rcrescaffold63370282220 | Terpenoid | HMGR | medium | pass |
| Rcrescaffold88540308630 | Terpenoid | HMGR | medium | pass |
| Rcrescaffold1365010040770 | Terpenoid | HMGS | medium | pass |
| Rcrescaffold34810241330 | Terpenoid | HMGS | medium | pass |